C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor coactivator 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027678 Ncoa3 10090 + 2:165992636-166073242 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088095 Ncoa3-201 165992637-166073242 protein_coding
  ENSMUST00000109252 Ncoa3-001 165992636-166071470 protein_coding
  ENSMUST00000139394 Ncoa3-004 166067430-166070200 retained_intron
  ENSMUST00000139658 Ncoa3-003 166060820-166066202 retained_intron
  ENSMUST00000153507 Ncoa3-002 166047918-166052398 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000088095ENSMUST00000109252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000088095 10.442±1.62 7.396±3.11 7.931±3.69 5.486±2.09 7.841±4.35 8.070±2.59 4.851±2.32 4.805±0.97 2.101±1.05 6.581±0.17 1.713±0.85 14.666±5.42 5.282±2.83 2.559±0.31
ENSMUST00000109252 N/A 5.003±0.42 7.570±0.00 N/A 7.389±1.94 6.324±1.24 4.320±0.00 7.161±1.17 2.625±1.04 7.669±0.89 0.796±0.10 N/A 6.162±4.04 3.184±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NW CIL_0008NW_0002 VISTA 2:165614396-166214787
CIL_0006IW CIL_0006IW_0003 CGP 2:165784152-166073242
CIL_0001Y0 CIL_0001Y0_0002 CGP 2:165992636-166155663

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0004402 IEA histone acetyltransferase activity
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0010628 IEA positive regulation of gene expression
GO:0016573 IEA histone acetylation
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IEA nuclear hormone receptor binding
GO:0035264 IMP multicellular organism growth
GO:0045618 IEA positive regulation of keratinocyte differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046983 IEA protein dimerization activity
GO:0047485 IEA protein N-terminus binding
GO:0048589 IMP developmental growth
GO:0060068 IMP vagina development
GO:0060713 IGI labyrinthine layer morphogenesis
GO:0060744 IMP mammary gland branching involved in thelarche
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077404 ncoa3 nuclear receptor coactivator 3 protein_coding Danio_rerio
ENSG00000124151 NCOA3 nuclear receptor coactivator 3 protein_coding Homo_sapiens

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