C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor coactivator 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109252 Ncoa3-001 ENSMUSG00000027678 10090 + 2:165992636-166071470 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000109252
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000109252 5.003±0.42 7.570±0.00 7.389±1.94 6.324±1.24 4.320±0.00 7.161±1.17 2.625±1.04 7.669±0.89 0.796±0.10 6.162±4.04 3.184±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NW CIL_0008NW_0002 VISTA 2:165614396-166214787
CIL_0006IW CIL_0006IW_0003 CGP 2:165784152-166073242
CIL_0001Y0 CIL_0001Y0_0002 CGP 2:165992636-166155663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0004402 IEA histone acetyltransferase activity
GO:0004871 IEA signal transducer activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0016573 IEA histone acetylation
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0035257 IEA nuclear hormone receptor binding
GO:0035264 IMP multicellular organism growth
GO:0046983 IEA protein dimerization activity
GO:0048589 IMP developmental growth
GO:0060068 IMP vagina development
GO:0060713 IGI labyrinthine layer morphogenesis
GO:0060744 IMP mammary gland branching involved in thelarche

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371997 NCOA3-002 protein_coding Homo_sapiens 0 1541
ENST00000371998 NCOA3-003 protein_coding Homo_sapiens 0 2730
ENST00000372004 NCOA3-001 protein_coding Homo_sapiens 0 2732
ENST00000497292 NCOA3-005 processed_transcript Homo_sapiens 0 481

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