C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter), member 17
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027894 Slc6a17 10090 - 3:107467543-107518018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029499 Slc6a17-002 107467548-107518018 protein_coding
  ENSMUST00000166736 Slc6a17-007 107500671-107517327 processed_transcript
  ENSMUST00000166892 Slc6a17-006 107495761-107517337 protein_coding
  ENSMUST00000167898 Slc6a17-004 107489773-107518018 retained_intron
  ENSMUST00000167975 Slc6a17-009 107489771-107493196 processed_transcript
  ENSMUST00000168211 Slc6a17-003 107467549-107500530 nonsense_mediated_decay
  ENSMUST00000169413 Slc6a17-008 107495715-107517945 processed_transcript
  ENSMUST00000169449 Slc6a17-001 107467543-107518018 protein_coding
  ENSMUST00000170429 Slc6a17-005 107482054-107517749 processed_transcript
  ENSMUST00000171029 Slc6a17-010 107467551-107468705 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029499ENSMUST00000166892ENSMUST00000167898ENSMUST00000167975ENSMUST00000168211ENSMUST00000169449ENSMUST00000170429ENSMUST00000171029
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029499 N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A 0.036±0.00 N/A 0.189±0.11 N/A 0.010±0.01 0.156±0.00
ENSMUST00000166892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.341±0.00 0.473±0.00
ENSMUST00000167898 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.01 N/A N/A N/A 0.068±0.02 N/A
ENSMUST00000167975 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.226±0.02 N/A
ENSMUST00000168211 0.621±0.44 0.327±0.13 N/A N/A 0.072±0.02 1.456±0.50 0.127±0.00 1.090±0.17 0.019±0.00 0.113±0.00 0.157±0.07 1.233±0.47 0.088±0.00 0.151±0.06
ENSMUST00000169449 1.617±0.98 0.523±0.30 6.261±0.79 14.059±8.52 0.104±0.00 2.230±0.73 0.702±0.26 4.735±1.67 0.065±0.05 0.368±0.01 0.155±0.11 0.865±0.53 0.197±0.18 0.221±0.16
ENSMUST00000170429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.012±0.00 N/A
ENSMUST00000171029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005575 ND cellular_component
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0008021 ISS synaptic vesicle
GO:0015804 ISS neutral amino acid transport
GO:0015816 ISS glycine transport
GO:0015820 ISS leucine transport
GO:0015824 ISS proline transport
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0032328 ISS alanine transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068787 slc6a17 solute carrier family 6, member 17 protein_coding Danio_rerio
ENSG00000197106 SLC6A17 solute carrier family 6 (neutral amino acid transporter), member 17 protein_coding Homo_sapiens

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