C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168211 Slc6a17-003 ENSMUSG00000027894 10090 - 3:107467549-107500530 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168211
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168211 0.621±0.44 0.327±0.13 0.072±0.02 1.456±0.50 0.127±0.00 1.090±0.17 0.019±0.00 0.113±0.00 0.157±0.07 1.233±0.47 0.088±0.00 0.151±0.06

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005575 ND cellular_component
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0008021 ISS synaptic vesicle
GO:0015804 ISS neutral amino acid transport
GO:0015816 ISS glycine transport
GO:0015820 ISS leucine transport
GO:0015824 ISS proline transport
GO:0030054 IEA cell junction
GO:0032328 ISS alanine transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000156570 slc6a17-201 protein_coding Danio_rerio 0 963
ENSDART00000099607 slc6a17-001 protein_coding Danio_rerio 0 941
ENSDART00000125353 slc6a15-001 protein_coding Danio_rerio 0 586
ENST00000331565 SLC6A17-001 protein_coding Homo_sapiens 0 2964
ENST00000465159 SLC6A17-002 processed_transcript Homo_sapiens 0 457

Loading