C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169449 Slc6a17-001 ENSMUSG00000027894 10090 - 3:107467543-107518018 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169449 1.617±0.98 0.523±0.30 6.261±0.79 14.059±8.52 0.104±0.00 2.230±0.73 0.702±0.26 4.735±1.67 0.065±0.05 0.368±0.01 0.155±0.11 0.865±0.53 0.197±0.18 0.221±0.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005575 ND cellular_component
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0008021 ISS synaptic vesicle
GO:0015804 ISS neutral amino acid transport
GO:0015816 ISS glycine transport
GO:0015820 ISS leucine transport
GO:0015824 ISS proline transport
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0032328 ISS alanine transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000156570 slc6a17-201 protein_coding Danio_rerio 0 963
ENSDART00000099607 slc6a17-001 protein_coding Danio_rerio 0 941
ENSDART00000125353 slc6a15-001 protein_coding Danio_rerio 0 586
ENST00000331565 SLC6A17-001 protein_coding Homo_sapiens 0 3432
ENST00000465159 SLC6A17-002 processed_transcript Homo_sapiens 0 457

Loading