C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif-containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027993 Trim2 10090 - 3:84160439-84305446 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054990 Trim2-002 84163722-84270791 protein_coding
  ENSMUST00000065380 Trim2-005 84163337-84212838 protein_coding
  ENSMUST00000107691 Trim2-003 84160440-84259812 protein_coding
  ENSMUST00000107692 Trim2-001 84160439-84304809 protein_coding
  ENSMUST00000107693 Trim2-201 84161874-84220877 protein_coding
  ENSMUST00000107695 Trim2-004 84160441-84220889 protein_coding
  ENSMUST00000122849 Trim2-012 84192200-84305397 protein_coding
  ENSMUST00000128574 Trim2-010 84163707-84220845 retained_intron
  ENSMUST00000132283 Trim2-011 84192211-84305446 protein_coding
  ENSMUST00000136651 Trim2-009 84206470-84220861 retained_intron
  ENSMUST00000136805 Trim2-006 84299962-84304741 processed_transcript
  ENSMUST00000137596 Trim2-008 84189802-84220874 retained_intron
  ENSMUST00000140568 Trim2-017 84177251-84190523 retained_intron
  ENSMUST00000140856 Trim2-007 84207779-84220874 retained_intron
  ENSMUST00000147901 Trim2-014 84193359-84259369 protein_coding
  ENSMUST00000152953 Trim2-013 84257683-84259369 processed_transcript
  ENSMUST00000154152 Trim2-015 84208381-84220874 protein_coding
  ENSMUST00000156347 Trim2-016 84190662-84191548 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054990ENSMUST00000065380ENSMUST00000107691ENSMUST00000107692ENSMUST00000107693ENSMUST00000107695ENSMUST00000128574ENSMUST00000147901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054990 1.794±0.00 4.427±0.00 N/A N/A N/A 16.473±5.89 N/A N/A N/A N/A N/A N/A 0.201±0.13 N/A
ENSMUST00000065380 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.00
ENSMUST00000107691 3.149±1.38 5.781±1.95 2.250±0.21 8.035±1.16 3.175±1.18 13.591±3.30 0.989±0.25 7.908±0.86 2.742±1.87 5.686±1.22 N/A 5.871±2.76 0.538±0.27 0.196±0.12
ENSMUST00000107692 N/A N/A N/A 4.771±2.07 N/A N/A N/A N/A 0.781±0.49 N/A 0.095±0.06 1.097±0.00 0.394±0.00 0.033±0.00
ENSMUST00000107693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.049±0.00
ENSMUST00000107695 1.488±0.08 N/A 0.542±0.06 11.329±4.36 N/A N/A N/A N/A 0.289±0.00 N/A N/A 2.701±1.59 0.393±0.00 N/A
ENSMUST00000128574 0.516±0.00 N/A N/A N/A 0.936±0.00 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A
ENSMUST00000147901 N/A 17.540±4.27 N/A N/A 7.543±0.36 30.499±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064O CIL_00064O_0002 CGP 3:84160439-84480429

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005737 NAS cytoplasm
GO:0008270 IEA:NAS zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0017022 NAS myosin binding
GO:0043523 IMP regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031817 trim2a tripartite motif-containing 2a protein_coding Danio_rerio
ENSDARG00000076174 trim2b tripartite motif-containing 2b protein_coding Danio_rerio
ENSG00000109654 TRIM2 tripartite motif containing 2 protein_coding Homo_sapiens

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