C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107692 Trim2-001 ENSMUSG00000027993 10090 - 3:84160439-84304809 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000107692
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000107692 4.771±2.07 0.781±0.49 0.095±0.06 1.097±0.00 0.394±0.00 0.033±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064O CIL_00064O_0002 CGP 3:84160439-84480429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 NAS cytoplasm
GO:0008270 IEA:NAS zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0017022 NAS myosin binding
GO:0043523 IMP regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338700 TRIM2-001 protein_coding Homo_sapiens 0 3827
ENST00000433687 TRIM2-010 protein_coding Homo_sapiens 0 651
ENST00000437508 TRIM2-004 protein_coding Homo_sapiens 0 3834
ENST00000441616 TRIM2-006 protein_coding Homo_sapiens 0 662
ENST00000460908 TRIM2-011 retained_intron Homo_sapiens 0 385
ENST00000479711 TRIM2-009 processed_transcript Homo_sapiens 0 592
ENST00000482578 TRIM2-002 retained_intron Homo_sapiens 0 592
ENST00000494872 TRIM2-005 processed_transcript Homo_sapiens 0 1971
ENST00000502281 TRIM2-013 processed_transcript Homo_sapiens 0 285

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