C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif-containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107691 Trim2-003 ENSMUSG00000027993 10090 - 3:84160440-84259812 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000107691
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000107691 3.149±1.38 5.781±1.95 2.250±0.21 8.035±1.16 3.175±1.18 13.591±3.30 0.989±0.25 7.908±0.86 2.742±1.87 5.686±1.22 5.871±2.76 0.538±0.27 0.196±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00064O CIL_00064O_0002 CGP 3:84160439-84480429

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 NAS cytoplasm
GO:0008270 IEA:NAS zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0017022 NAS myosin binding
GO:0043523 IMP regulation of neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338700 TRIM2-001 protein_coding Homo_sapiens 0 3829
ENST00000433687 TRIM2-010 protein_coding Homo_sapiens 0 651
ENST00000437508 TRIM2-004 protein_coding Homo_sapiens 0 3825
ENST00000441616 TRIM2-006 protein_coding Homo_sapiens 0 662
ENST00000460908 TRIM2-011 retained_intron Homo_sapiens 0 385
ENST00000479711 TRIM2-009 processed_transcript Homo_sapiens 0 593
ENST00000482578 TRIM2-002 retained_intron Homo_sapiens 0 593
ENST00000494872 TRIM2-005 processed_transcript Homo_sapiens 0 1973
ENST00000496978 TRIM2-008 processed_transcript Homo_sapiens 0.0000000000006 79
ENST00000502281 TRIM2-013 processed_transcript Homo_sapiens 0 287

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