C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PNN interacting serine/arginine-rich
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028248 Pnisr 10090 + 4:21847583-21876475 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029911 Pnisr-001 21847583-21876475 protein_coding
  ENSMUST00000098238 Pnisr-005 21848055-21876467 protein_coding
  ENSMUST00000108229 Pnisr-002 21848058-21871342 protein_coding
  ENSMUST00000133241 Pnisr-013 21874204-21875256 processed_transcript
  ENSMUST00000138419 Pnisr-009 21854068-21859202 processed_transcript
  ENSMUST00000138681 Pnisr-006 21848064-21857990 processed_transcript
  ENSMUST00000148561 Pnisr-012 21871034-21873864 processed_transcript
  ENSMUST00000150368 Pnisr-007 21848081-21862123 processed_transcript
  ENSMUST00000150927 Pnisr-010 21858726-21862043 processed_transcript
  ENSMUST00000151621 Pnisr-008 21848073-21854924 processed_transcript
  ENSMUST00000152666 Pnisr-003 21848058-21860468 processed_transcript
  ENSMUST00000156136 Pnisr-011 21858999-21860886 processed_transcript
  ENSMUST00000185001 Pnisr-004 21848048-21873755 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029911ENSMUST00000098238ENSMUST00000108229ENSMUST00000152666ENSMUST00000156136
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029911 5.564±2.23 2.668±0.00 13.394±0.45 25.447±15.13 4.181±0.95 5.113±1.39 3.333±0.45 3.799±1.31 5.317±4.02 5.196±1.27 4.886±0.99 12.515±10.84 11.092±7.77 15.380±18.48
ENSMUST00000098238 5.699±2.65 19.730±2.67 16.952±8.26 28.802±5.25 6.463±2.95 8.632±1.96 1.869±0.39 3.171±0.83 6.287±3.41 8.488±3.61 5.886±1.79 18.007±11.28 9.068±2.80 4.717±0.00
ENSMUST00000108229 10.350±3.81 7.951±1.05 15.589±1.77 21.652±4.09 6.577±0.92 6.989±1.51 3.207±0.35 4.472±1.05 7.720±4.38 8.833±2.79 4.447±0.55 13.096±8.26 7.229±1.84 5.604±1.62
ENSMUST00000152666 N/A N/A N/A N/A 2.125±0.00 N/A 1.736±0.12 1.740±0.00 1.924±0.00 5.065±0.59 N/A N/A N/A N/A
ENSMUST00000156136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.743±0.00 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069855 pnisr PNN-interacting serine/arginine-rich protein protein_coding Danio_rerio
ENSG00000132424 PNISR PNN-interacting serine/arginine-rich protein protein_coding Homo_sapiens

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