C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PNN interacting serine/arginine-rich
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029911 Pnisr-001 ENSMUSG00000028248 10090 + 4:21847583-21876475 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029911
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029911 5.564±2.23 2.668±0.00 13.394±0.45 25.447±15.13 4.181±0.95 5.113±1.39 3.333±0.45 3.799±1.31 5.317±4.02 5.196±1.27 4.886±0.99 12.515±10.84 11.092±7.77 15.380±18.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000124515 pnisr-001 protein_coding Danio_rerio 2e-30 139
ENSDART00000123980 pnisr-002 protein_coding Danio_rerio 1e-23 117
ENST00000369239 PNISR-007 protein_coding Homo_sapiens 0 3144
ENST00000438806 PNISR-201 protein_coding Homo_sapiens 0 3171
ENST00000460600 PNISR-004 processed_transcript Homo_sapiens 0 462
ENST00000463021 PNISR-009 processed_transcript Homo_sapiens 0 416
ENST00000476159 PNISR-002 processed_transcript Homo_sapiens 0 459
ENST00000478777 PNISR-008 nonsense_mediated_decay Homo_sapiens 0 1546
ENST00000481229 PNISR-003 processed_transcript Homo_sapiens 0 475
ENST00000492294 PNISR-001 processed_transcript Homo_sapiens 0 438

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