Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	guanylate binding protein 3
ENSMUST00000106222	Gbp3-002	ENSMUSG00000028268	10090	+	3:142560052-142573202	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENSMUST00000106222	3.180±0.82	3.035±0.03	6.448±1.31	0.038±0.00	1.912±0.74	0.557±0.06	0.635±0.42	1.942±0.26	0.858±0.51	2.201±0.46	0.353±0.12	1.649±0.57	0.794±0.30	0.139±0.03

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_000033	CIL_000033_000D	CGP	3:142496934-142619179
CIL_000033	CIL_000033_000C	CGP	3:142530338-142573209
CIL_000033	CIL_000033_0009	CGP	3:142560052-142638008

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003924	ISS	GTPase activity
GO:0005525	IEA	GTP binding
GO:0005634	IEA	nucleus
GO:0005829	IDA	cytosol
GO:0006184	IEA	GTP catabolic process
GO:0020005	IDA	symbiont-containing vacuole membrane
GO:0031410	IDA	cytoplasmic vesicle
GO:0035458	IDA	cellular response to interferon-beta
GO:0042832	IDA	defense response to protozoan
GO:0044406	IDA	adhesion of symbiont to host
GO:0050830	IDA	defense response to Gram-positive bacterium
GO:0071346	IDA	cellular response to interferon-gamma

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSDART00000097448	si:ch211-209n20.1-201	protein_coding	Danio_rerio	8.00141e-43	180
ENSDART00000097447	si:ch211-209n20.1-202	protein_coding	Danio_rerio	8.00141e-43	180
ENSDART00000141250	si:ch211-209n20.1-001	protein_coding	Danio_rerio	8.00141e-43	180
ENST00000294671	GBP7-001	protein_coding	Homo_sapiens	0	1212
ENST00000355754	GBP4-001	protein_coding	Homo_sapiens	0	1336
ENST00000370456	GBP6-001	protein_coding	Homo_sapiens	0	1048

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