C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: guanylate binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106221 Gbp3-003 ENSMUSG00000028268 10090 + 3:142560411-142573207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106221 4.101±0.80 2.066±1.05 7.731±0.91 0.108±0.07 3.101±1.14 0.899±0.16 0.882±0.08 3.187±2.69 0.624±0.31 2.393±0.46 0.751±0.38 2.381±1.18 0.744±0.43 0.296±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000033 CIL_000033_000D CGP 3:142496934-142619179
CIL_000033 CIL_000033_000C CGP 3:142530338-142573209
CIL_000033 CIL_000033_0009 CGP 3:142560052-142638008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0006184 IEA GTP catabolic process
GO:0020005 IDA symbiont-containing vacuole membrane
GO:0031410 IDA cytoplasmic vesicle
GO:0035458 IDA cellular response to interferon-beta
GO:0042832 IDA defense response to protozoan
GO:0044406 IDA adhesion of symbiont to host
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0071346 IDA cellular response to interferon-gamma

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000097448 si:ch211-209n20.1-201 protein_coding Danio_rerio 8.00141e-43 180
ENSDART00000097447 si:ch211-209n20.1-202 protein_coding Danio_rerio 8.00141e-43 180
ENSDART00000141250 si:ch211-209n20.1-001 protein_coding Danio_rerio 8.00141e-43 180
ENST00000294671 GBP7-001 protein_coding Homo_sapiens 0 1212
ENST00000355754 GBP4-001 protein_coding Homo_sapiens 0 1336
ENST00000370456 GBP6-001 protein_coding Homo_sapiens 0 1048

Loading