C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107377 Tnc-201 ENSMUSG00000028364 10090 - 4:63959785-64047015 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderHeartKidneyLiverLungMuscleOvaryTestisENSMUST00000107377
Transcript ID Adrenal Bladder Heart Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000107377 1.786±0.70 9.261±0.00 0.117±0.07 1.894±0.00 0.121±0.00 1.593±0.19 0.209±0.02 23.053±11.97 0.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OU CIL_0004OU_0002 CGP 4:63831308-64047015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IEA osteoblast differentiation
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0005615 IEA extracellular space
GO:0005925 IEA focal adhesion
GO:0007155 IEA cell adhesion
GO:0007162 IEA negative regulation of cell adhesion
GO:0007528 IMP neuromuscular junction development
GO:0008284 IDA positive regulation of cell proliferation
GO:0009611 IEA response to wounding
GO:0009612 IEA response to mechanical stimulus
GO:0010628 IDA positive regulation of gene expression
GO:0014012 IMP peripheral nervous system axon regeneration
GO:0016020 IEA membrane
GO:0031012 IDA extracellular matrix
GO:0031175 IEA neuron projection development
GO:0042060 IEA wound healing
GO:0042475 IEA odontogenesis of dentin-containing tooth
GO:0045471 IEA response to ethanol
GO:0045545 ISO syndecan binding
GO:0060447 IEA bud outgrowth involved in lung branching
GO:0060739 IMP mesenchymal-epithelial cell signaling involved in prostate gland development
GO:0060740 IMP prostate gland epithelium morphogenesis
GO:0071300 IEA cellular response to retinoic acid
GO:0071305 IEA cellular response to vitamin D
GO:0071774 IEA response to fibroblast growth factor
GO:0071799 IEA cellular response to prostaglandin D stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341037 TNC-011 protein_coding Homo_sapiens 0 6634
ENST00000350763 TNC-001 protein_coding Homo_sapiens 0 3930
ENST00000423613 TNC-009 protein_coding Homo_sapiens 0 3801
ENST00000460345 TNC-002 processed_transcript Homo_sapiens 0 505
ENST00000473855 TNC-005 processed_transcript Homo_sapiens 0 300
ENST00000476680 TNC-003 processed_transcript Homo_sapiens 0 431
ENST00000498724 TNC-006 processed_transcript Homo_sapiens 0 492
ENST00000535648 TNC-201 protein_coding Homo_sapiens 0 3319
ENST00000537320 TNC-012 protein_coding Homo_sapiens 0 3190
ENST00000542877 TNC-007 protein_coding Homo_sapiens 0 3168
ENST00000544972 TNC-013 protein_coding Homo_sapiens 0 2074

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