C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin family member 30
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028385 Snx30 10090 + 4:59805840-59904737 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030080 Snx30-001 59805840-59904737 protein_coding
  ENSMUST00000123665 Snx30-004 59805880-59834106 processed_transcript
  ENSMUST00000143185 Snx30-003 59884780-59894554 processed_transcript
  ENSMUST00000145199 Snx30-002 59884694-59900533 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030080ENSMUST00000123665ENSMUST00000145199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030080 1.929±0.72 1.130±0.24 2.471±0.37 4.245±0.24 3.543±1.41 1.734±0.18 0.628±0.14 2.753±0.65 1.343±0.39 2.242±1.43 0.464±0.18 2.275±0.68 8.381±3.02 0.369±0.14
ENSMUST00000123665 N/A 1.453±0.26 N/A N/A N/A 1.523±0.00 N/A N/A N/A N/A N/A 1.916±0.19 N/A N/A
ENSMUST00000145199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X4 CIL_0005X4_0002 CGP 4:59769637-59904737
CIL_0000Y7 CIL_0000Y7_0002 CGP 4:59805840-59915056

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006915 IBA apoptotic process
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069601 snx30 sorting nexin family member 30 protein_coding Danio_rerio
ENSG00000148158 SNX30 sorting nexin family member 30 protein_coding Homo_sapiens

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