C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 30
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030080 Snx30-001 ENSMUSG00000028385 10090 + 4:59805840-59904737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030080
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030080 1.929±0.72 1.130±0.24 2.471±0.37 4.245±0.24 3.543±1.41 1.734±0.18 0.628±0.14 2.753±0.65 1.343±0.39 2.242±1.43 0.464±0.18 2.275±0.68 8.381±3.02 0.369±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X4 CIL_0005X4_0002 CGP 4:59769637-59904737
CIL_0000Y7 CIL_0000Y7_0002 CGP 4:59805840-59915056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006915 IBA apoptotic process
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374232 SNX30-001 protein_coding Homo_sapiens 0 1895
ENST00000416585 SNX30-002 protein_coding Homo_sapiens 0 455

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