C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030133 Nfx1-002 ENSMUSG00000028423 10090 + 4:40970906-41013871 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverMusclePlacentaTestisENSMUST00000030133
Transcript ID Bladder Brain Heart Kidney Liver Muscle Placenta Testis
ENSMUST00000030133 3.271±0.13 6.311±1.49 1.335±0.26 2.201±0.60 2.322±0.92 1.954±0.20 4.226±0.96 1.479±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0002 CGP 4:40948407-41025993
CIL_0006AR CIL_0006AR_0002 CGP 4:40970906-41048139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0045347 IDA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233838 GGCX-001 protein_coding Homo_sapiens 0.00004 57
ENST00000263960 COQ10B-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000318524 NFX1-004 protein_coding Homo_sapiens 0 2719
ENST00000379521 NFX1-002 protein_coding Homo_sapiens 0 2719
ENST00000379540 NFX1-001 protein_coding Homo_sapiens 0 2719
ENST00000466971 NFX1-006 processed_transcript Homo_sapiens 0 333
ENST00000624302 AC008686.1-201 protein_coding Homo_sapiens 0.0000001 60

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