C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear transcription factor, X-box binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098143 Nfx1-001 ENSMUSG00000028423 10090 + 4:40970906-41025993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098143
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098143 10.406±2.08 8.233±1.35 10.373±1.01 9.206±3.55 10.667±2.58 8.554±1.76 3.504±0.94 6.013±1.32 6.449±2.61 7.547±0.68 3.437±0.53 15.284±4.34 12.398±5.15 5.020±2.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006AW CIL_0006AW_0002 CGP 4:40948407-41025993
CIL_0006AR CIL_0006AR_0002 CGP 4:40970906-41048139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0044822 IEA poly(A) RNA binding
GO:0045347 IDA negative regulation of MHC class II biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318524 NFX1-004 protein_coding Homo_sapiens 0 2719
ENST00000379521 NFX1-002 protein_coding Homo_sapiens 0 3507
ENST00000379540 NFX1-001 protein_coding Homo_sapiens 0 4006
ENST00000466971 NFX1-006 processed_transcript Homo_sapiens 0 652

Loading