C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD23b homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028426 Rad23b 10090 + 4:55350043-55392237 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030134 Rad23b-001 55350043-55392237 protein_coding
  ENSMUST00000127266 Rad23b-002 55350050-55368574 processed_transcript
  ENSMUST00000148719 Rad23b-004 55350052-55351184 processed_transcript
  ENSMUST00000156263 Rad23b-003 55350090-55381116 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030134ENSMUST00000127266ENSMUST00000148719ENSMUST00000156263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030134 14.767±10.94 19.851±3.84 31.838±1.01 35.657±6.02 13.080±5.51 10.203±6.46 8.773±5.23 7.993±4.35 22.821±11.42 12.635±1.69 14.228±8.09 24.210±12.01 59.262±9.79 19.264±3.62
ENSMUST00000127266 N/A 34.720±0.00 N/A N/A 24.020±5.58 N/A N/A N/A N/A N/A N/A 33.724±18.46 N/A N/A
ENSMUST00000148719 N/A 45.196±16.76 N/A N/A 25.688±2.85 37.790±8.87 N/A 19.460±1.29 N/A 36.764±9.18 N/A 32.914±8.18 N/A N/A
ENSMUST00000156263 37.209±12.34 86.366±13.06 N/A 39.092±3.77 45.029±17.85 32.699±13.28 23.152±10.28 32.552±8.11 63.919±20.01 35.371±0.00 N/A 41.571±12.20 92.201±12.03 41.603±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FS CIL_0001FS_0002 CGP 4:54945048-55392237
CIL_000225 CIL_000225_0003 CGP 4:55350043-55532466

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000715 IEA nucleotide-excision repair, DNA damage recognition
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0031593 IEA polyubiquitin binding
GO:0032434 IEA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0071942 ISS XPC complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021550 rad23b RAD23 homolog B (S. cerevisiae) protein_coding Danio_rerio
ENSG00000119318 RAD23B RAD23 homolog B (S. cerevisiae) protein_coding Homo_sapiens

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