C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001FS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063381-ENSDARG00000021550 CGP 7955 21:537753-602359
GeneTranscriptPositionBiotype
ENSDARG00000021550 (rad23b)
RAD23 homolog B (S. cerevisiae) 		ENSDART00000124615 (rad23b-201) 574687-602359 protein_coding
ENSDARG00000063381 (ZNF462)
zinc finger protein 462 		ENSDART00000092579 (ZNF462-201) 537753-568922 protein_coding
ENSDARG00000085814 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000121214 (5S_rRNA.1380-201) 546431-546547 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0001FS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060206-ENSMUSG00000028426 CGP 10090 4:54945048-55392237
GeneTranscriptPositionBiotype
ENSMUSG00000028426 (Rad23b)
RAD23b homolog (S. cerevisiae) 		ENSMUST00000030134 (Rad23b-001) 55350043-55392237 protein_coding
ENSMUST00000127266 (Rad23b-002) 55350050-55368574 processed_transcript
ENSMUST00000148719 (Rad23b-004) 55350052-55351184 processed_transcript
ENSMUST00000156263 (Rad23b-003) 55350090-55381116 processed_transcript
ENSMUSG00000060206 (Zfp462)
zinc finger protein 462 		ENSMUST00000030131 (Zfp462-003) 55011366-55081358 protein_coding
ENSMUST00000079605 (Zfp462-004) 55011480-55081330 protein_coding
ENSMUST00000098070 (Zfp462-001) 54947976-55083563 protein_coding
ENSMUST00000133895 (Zfp462-002) 54945048-55008314 protein_coding
ENSMUSG00000077403 (Gm25419)
predicted gene, 25419 		ENSMUST00000104215 (Gm25419-201) 55299655-55299845 snoRNA
ENSMUSG00000081177 (Gm12509)
predicted gene 12509 		ENSMUST00000118033 (Gm12509-001) 55163008-55163616 processed_pseudogene
ENSMUSG00000081504 (Gm12508)
predicted gene 12508 		ENSMUST00000121282 (Gm12508-001) 55254740-55255219 processed_pseudogene
ENSMUSG00000082704 (Gm12515)
predicted gene 12515 		ENSMUST00000120116 (Gm12515-001) 55116563-55116923 processed_pseudogene
ENSMUSG00000087614 (Gm12514)
predicted gene 12514 		ENSMUST00000142782 (Gm12514-002) 55131436-55135501 lincRNA
ENSMUST00000150455 (Gm12514-001) 55131208-55279479 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001FS_0001ENSDARG00000021550ENSDART00000124615ENSDARG00000063381ENSDART00000092579ENSDARG00000085814ENSDART00000121214CIL_0001FS_0002ENSMUSG00000028426ENSMUST00000030134ENSMUST00000127266ENSMUST00000148719ENSMUST00000156263ENSMUSG00000060206ENSMUST00000030131ENSMUST00000079605ENSMUST00000098070ENSMUST00000133895ENSMUSG00000077403ENSMUST00000104215ENSMUSG00000081177ENSMUST00000118033ENSMUSG00000081504ENSMUST00000121282ENSMUSG00000082704ENSMUST00000120116ENSMUSG00000087614ENSMUST00000142782ENSMUST00000150455
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001FS_0001ENSDARG00000021550ENSDART00000124615ENSDARG00000063381ENSDART00000092579ENSDARG00000085814ENSDART00000121214CIL_0001FS_0002ENSMUSG00000028426ENSMUST00000030134ENSMUST00000127266ENSMUST00000148719ENSMUST00000156263ENSMUSG00000060206ENSMUST00000030131ENSMUST00000079605ENSMUST00000098070ENSMUSG00000077403ENSMUST00000104215ENSMUSG00000081177ENSMUST00000118033ENSMUSG00000081504ENSMUST00000121282ENSMUSG00000082704ENSMUST00000120116ENSMUSG00000087614ENSMUST00000142782ENSMUST00000150455
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021550 ENSDART00000124615 N/A N/A N/A 15.329±8.23 N/A N/A 25.932±25.36 9.099±9.90 6.304±0.00 N/A 50.663±0.00 N/A N/A N/A
ENSDARG00000063381 ENSDART00000092579 N/A N/A N/A 0.417±0.00 N/A N/A 0.529±0.00 N/A 0.088±0.00 N/A 0.286±0.00 N/A N/A N/A
ENSDARG00000085814 ENSDART00000121214 N/A N/A N/A N/A N/A N/A 0.867±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028426 ENSMUST00000030134 14.767±10.94 19.851±3.84 31.838±1.01 35.657±6.02 13.080±5.51 10.203±6.46 8.773±5.23 7.993±4.35 22.821±11.42 12.635±1.69 14.228±8.09 24.210±12.01 59.262±9.79 19.264±3.62
ENSMUST00000127266 N/A 34.720±0.00 N/A N/A 24.020±5.58 N/A N/A N/A N/A N/A N/A 33.724±18.46 N/A N/A
ENSMUST00000148719 N/A 45.196±16.76 N/A N/A 25.688±2.85 37.790±8.87 N/A 19.460±1.29 N/A 36.764±9.18 N/A 32.914±8.18 N/A N/A
ENSMUST00000156263 37.209±12.34 86.366±13.06 N/A 39.092±3.77 45.029±17.85 32.699±13.28 23.152±10.28 32.552±8.11 63.919±20.01 35.371±0.00 N/A 41.571±12.20 92.201±12.03 41.603±0.00
ENSMUSG00000060206 ENSMUST00000030131 0.898±0.00 1.913±0.00 N/A N/A 0.899±0.47 0.640±0.07 0.557±0.09 N/A 0.057±0.01 N/A 0.993±0.22 1.132±0.00 N/A N/A
ENSMUST00000079605 1.296±0.49 1.941±0.45 1.171±0.17 7.583±2.64 1.164±0.32 0.838±0.27 N/A 1.577±0.41 0.065±0.03 N/A 0.800±0.38 1.846±1.10 1.010±0.30 2.603±3.82
ENSMUST00000098070 0.853±0.50 2.350±0.23 2.254±0.00 6.726±2.73 0.740±0.52 1.315±0.36 0.164±0.00 1.089±0.48 0.123±0.09 1.438±0.39 0.971±0.42 3.207±1.03 0.817±0.46 0.435±0.03
ENSMUST00000133895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000077403 ENSMUST00000104215 N/A N/A N/A 0.831±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081177 ENSMUST00000118033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A
ENSMUSG00000081504 ENSMUST00000121282 N/A 0.417±0.15 0.037±0.01 N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.02 0.208±0.17 N/A
ENSMUSG00000082704 ENSMUST00000120116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A 0.048±0.00 0.314±0.00
ENSMUSG00000087614 ENSMUST00000142782 N/A N/A N/A 0.069±0.00 N/A N/A N/A N/A 0.021±0.00 N/A N/A 0.074±0.00 0.101±0.00 N/A
ENSMUST00000150455 N/A N/A 0.013±0.00 N/A 0.101±0.00 N/A N/A N/A N/A N/A 0.217±0.18 0.043±0.00 0.296±0.25 0.027±0.00

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