C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000225_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000021550-ENSDARG00000079922 CGP 7955 21:574687-627555
GeneTranscriptPositionBiotype
ENSDARG00000021550 (rad23b)
RAD23 homolog B (S. cerevisiae) 		ENSDART00000124615 (rad23b-201) 574687-602359 protein_coding
ENSDARG00000079922 (klf4a)
Kruppel-like factor 4a 		ENSDART00000110297 (klf4a-201) 611998-627555 protein_coding
CIL_000225_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000119318-ENSG00000136826 CGP 9606 9:107283137-107490482
GeneTranscriptPositionBiotype
ENSG00000119318 (RAD23B)
RAD23 homolog B (S. cerevisiae) 		ENST00000358015 (RAD23B-001) 107283279-107332194 protein_coding
ENST00000416373 (RAD23B-201) 107284053-107332192 protein_coding
ENST00000419616 (RAD23B-002) 107283137-107306590 protein_coding
ENST00000442587 (RAD23B-003) 107284695-107306453 protein_coding
ENST00000457811 (RAD23B-004) 107306542-107332189 protein_coding
ENSG00000136826 (KLF4)
Kruppel-like factor 4 (gut) 		ENST00000374672 (KLF4-002) 107484852-107489646 protein_coding
ENST00000411706 (KLF4-004) 107487669-107489130 protein_coding
ENST00000420475 (KLF4-006) 107488989-107490482 protein_coding
ENST00000493306 (KLF4-003) 107484852-107489437 retained_intron
ENST00000497048 (KLF4-001) 107484852-107488447 retained_intron
ENST00000610832 (KLF4-201) 107484854-107489766 protein_coding
ENSG00000213558 (HMGN2P32)
high mobility group nucleosomal binding domain 2 pseudogene 32 		ENST00000444648 (HMGN2P32-001) 107458038-107458306 processed_pseudogene
ENSG00000226825 (LINC01509)
long intergenic non-protein coding RNA 1509 		ENST00000415302 (LINC01509-002) 107427240-107428402 lincRNA
ENST00000423523 (LINC01509-001) 107420284-107430802 lincRNA
ENSG00000276883 (AL137852.1)
 ENST00000619814 (AL137852.1-201) 107292369-107292456 miRNA
CIL_000225_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028426-ENSMUSG00000003032 CGP 10090 4:55350043-55532466
GeneTranscriptPositionBiotype
ENSMUSG00000003032 (Klf4)
Kruppel-like factor 4 (gut) 		ENSMUST00000107619 (Klf4-001) 55527143-55532466 protein_coding
ENSMUST00000129250 (Klf4-003) 55530603-55531770 protein_coding
ENSMUST00000132746 (Klf4-002) 55530712-55532453 protein_coding
ENSMUSG00000028426 (Rad23b)
RAD23b homolog (S. cerevisiae) 		ENSMUST00000030134 (Rad23b-001) 55350043-55392237 protein_coding
ENSMUST00000127266 (Rad23b-002) 55350050-55368574 processed_transcript
ENSMUST00000148719 (Rad23b-004) 55350052-55351184 processed_transcript
ENSMUST00000156263 (Rad23b-003) 55350090-55381116 processed_transcript
ENSMUSG00000077635 (Gm22150)
predicted gene, 22150 		ENSMUST00000104447 (Gm22150-201) 55469025-55469159 snoRNA
ENSMUSG00000082952 (Gm12507)
predicted gene 12507 		ENSMUST00000119155 (Gm12507-001) 55508294-55508708 processed_pseudogene
ENSMUSG00000084144 (Gm12516)
predicted gene 12516 		ENSMUST00000120819 (Gm12516-001) 55392317-55392701 processed_pseudogene
ENSMUSG00000084404 (Gm12513)
predicted gene 12513 		ENSMUST00000118617 (Gm12513-001) 55408956-55409307 processed_pseudogene
ENSMUSG00000086346 (Gm12510)
predicted gene 12510 		ENSMUST00000152190 (Gm12510-001) 55450684-55465814 lincRNA
ENSMUSG00000087070 (Gm12505)
predicted gene 12505 		ENSMUST00000146041 (Gm12505-001) 55410443-55418842 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000225_0001ENSDARG00000021550ENSDART00000124615ENSDARG00000079922ENSDART00000110297CIL_000225_0002ENSG00000119318ENST00000358015ENST00000416373ENST00000419616ENST00000442587ENST00000457811ENSG00000136826ENST00000374672ENST00000411706ENST00000420475ENST00000493306ENST00000497048ENST00000610832ENSG00000213558ENST00000444648ENSG00000226825ENST00000415302ENST00000423523ENSG00000276883ENST00000619814CIL_000225_0003ENSMUSG00000003032ENSMUST00000107619ENSMUST00000129250ENSMUST00000132746ENSMUSG00000028426ENSMUST00000030134ENSMUST00000127266ENSMUST00000148719ENSMUST00000156263ENSMUSG00000077635ENSMUST00000104447ENSMUSG00000082952ENSMUST00000119155ENSMUSG00000084144ENSMUST00000120819ENSMUSG00000084404ENSMUST00000118617ENSMUSG00000086346ENSMUST00000152190ENSMUSG00000087070ENSMUST00000146041
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000225_0001ENSDARG00000021550ENSDART00000124615ENSDARG00000079922ENSDART00000110297CIL_000225_0002ENSG00000119318ENST00000358015ENST00000416373ENSG00000136826ENST00000374672ENST00000420475ENST00000493306ENST00000497048ENST00000610832ENSG00000213558ENST00000444648ENSG00000226825ENST00000415302ENST00000423523ENSG00000276883ENST00000619814CIL_000225_0003ENSMUSG00000003032ENSMUST00000107619ENSMUSG00000028426ENSMUST00000030134ENSMUST00000127266ENSMUST00000148719ENSMUST00000156263ENSMUSG00000077635ENSMUST00000104447ENSMUSG00000082952ENSMUST00000119155ENSMUSG00000084144ENSMUST00000120819ENSMUSG00000084404ENSMUST00000118617ENSMUSG00000086346ENSMUST00000152190ENSMUSG00000087070ENSMUST00000146041
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000021550 ENSDART00000124615 N/A N/A N/A 15.329±8.23 N/A N/A 25.932±25.36 9.099±9.90 6.304±0.00 N/A 50.663±0.00 N/A N/A N/A
ENSDARG00000079922 ENSDART00000110297 N/A N/A N/A 3.548±2.59 N/A N/A 0.679±0.29 0.349±0.00 0.061±0.00 N/A 4.664±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000119318 ENST00000358015 35.814±0.00 21.480±0.00 5.235±0.00 12.941±0.90 29.720±22.27 21.951±12.61 14.934±7.79 19.237±5.25 21.621±8.94 16.897±9.45 27.175±20.05 23.818±4.25 23.985±11.40 43.659±0.00
ENST00000416373 N/A N/A N/A N/A N/A N/A N/A 3.704±0.00 N/A N/A N/A N/A 4.696±0.00 N/A
ENST00000419616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000136826 ENST00000374672 19.125±0.00 6.307±0.00 N/A N/A N/A N/A 8.266±0.00 N/A 1.374±0.71 22.094±0.00 8.292±0.00 13.204±4.84 15.123±6.12 5.715±1.09
ENST00000411706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420475 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.591±0.00 N/A
ENST00000493306 N/A N/A N/A 1.099±0.00 N/A N/A 0.584±0.00 N/A N/A N/A N/A 5.367±3.33 N/A N/A
ENST00000497048 14.232±0.00 6.703±0.00 2.243±0.00 1.290±0.00 8.110±4.37 11.165±7.57 0.381±0.00 0.845±0.00 2.150±0.27 7.846±3.37 N/A 14.082±12.03 5.056±0.00 6.117±0.00
ENST00000610832 N/A N/A N/A 0.632±0.00 5.811±2.82 4.444±0.00 N/A 0.987±0.37 N/A 3.536±0.00 N/A 10.702±0.00 N/A N/A
ENSG00000213558 ENST00000444648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.01
ENSG00000226825 ENST00000415302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.445±0.00 N/A
ENST00000423523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.082±0.00 0.254±0.00 1.677±0.00
ENSG00000276883 ENST00000619814 N/A N/A N/A N/A N/A N/A 2.524±0.00 N/A N/A N/A N/A 41.075±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003032 ENSMUST00000107619 15.088±2.14 5.467±1.03 26.407±0.23 0.912±0.51 16.905±7.54 162.562±41.67 7.912±2.16 3.007±0.70 0.447±0.25 35.087±3.61 4.446±0.68 5.971±2.48 9.815±9.11 34.769±18.68
ENSMUST00000129250 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000028426 ENSMUST00000030134 14.767±10.94 19.851±3.84 31.838±1.01 35.657±6.02 13.080±5.51 10.203±6.46 8.773±5.23 7.993±4.35 22.821±11.42 12.635±1.69 14.228±8.09 24.210±12.01 59.262±9.79 19.264±3.62
ENSMUST00000127266 N/A 34.720±0.00 N/A N/A 24.020±5.58 N/A N/A N/A N/A N/A N/A 33.724±18.46 N/A N/A
ENSMUST00000148719 N/A 45.196±16.76 N/A N/A 25.688±2.85 37.790±8.87 N/A 19.460±1.29 N/A 36.764±9.18 N/A 32.914±8.18 N/A N/A
ENSMUST00000156263 37.209±12.34 86.366±13.06 N/A 39.092±3.77 45.029±17.85 32.699±13.28 23.152±10.28 32.552±8.11 63.919±20.01 35.371±0.00 N/A 41.571±12.20 92.201±12.03 41.603±0.00
ENSMUSG00000077635 ENSMUST00000104447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.348±0.96 N/A N/A
ENSMUSG00000082952 ENSMUST00000119155 N/A N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A N/A 0.074±0.01 N/A N/A N/A
ENSMUSG00000084144 ENSMUST00000120819 0.191±0.07 0.607±0.00 0.257±0.11 0.534±0.05 0.187±0.03 0.557±0.00 N/A 0.140±0.01 0.322±0.27 0.161±0.00 0.194±0.00 0.736±0.08 0.321±0.06 0.953±0.09
ENSMUSG00000084404 ENSMUST00000118617 0.207±0.00 N/A 0.047±0.00 N/A 0.419±0.21 N/A N/A N/A N/A N/A N/A 0.411±0.22 N/A 0.183±0.00
ENSMUSG00000086346 ENSMUST00000152190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.526±0.31 N/A N/A
ENSMUSG00000087070 ENSMUST00000146041 0.048±0.00 0.413±0.12 0.133±0.07 N/A 0.049±0.00 0.105±0.00 0.076±0.04 0.169±0.04 0.213±0.16 0.110±0.07 N/A 0.758±0.51 0.094±0.05 0.456±0.25

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