C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23b homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030134 Rad23b-001 ENSMUSG00000028426 10090 + 4:55350043-55392237 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030134 14.767±10.94 19.851±3.84 31.838±1.01 35.657±6.02 13.080±5.51 10.203±6.46 8.773±5.23 7.993±4.35 22.821±11.42 12.635±1.69 14.228±8.09 24.210±12.01 59.262±9.79 19.264±3.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FS CIL_0001FS_0002 CGP 4:54945048-55392237
CIL_000225 CIL_000225_0003 CGP 4:55350043-55532466

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000715 IEA nucleotide-excision repair, DNA damage recognition
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006974 IDA cellular response to DNA damage stimulus
GO:0007283 IMP spermatogenesis
GO:0031593 IEA polyubiquitin binding
GO:0032434 IEA regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0071942 ISS XPC complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358015 RAD23B-001 protein_coding Homo_sapiens 0 2745
ENST00000416003 RAD23BP2-001 processed_pseudogene Homo_sapiens 0 684
ENST00000416373 RAD23B-201 protein_coding Homo_sapiens 0 2639
ENST00000419616 RAD23B-002 protein_coding Homo_sapiens 0 475
ENST00000421404 RAD23BP1-001 processed_pseudogene Homo_sapiens 0 1109
ENST00000442587 RAD23B-003 protein_coding Homo_sapiens 0 307
ENST00000457811 RAD23B-004 protein_coding Homo_sapiens 0 361

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