C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: basonuclin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028487 Bnc2 10090 - 4:84275095-84675275 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000102820 Bnc2-002 84275095-84675034 protein_coding
  ENSMUST00000107198 Bnc2-007 84275229-84675067 protein_coding
  ENSMUST00000123276 Bnc2-003 84388683-84674999 retained_intron
  ENSMUST00000175756 Bnc2-013 84391052-84675078 protein_coding
  ENSMUST00000175757 Bnc2-022 84293238-84507739 processed_transcript
  ENSMUST00000175800 Bnc2-005 84293214-84674996 protein_coding
  ENSMUST00000175969 Bnc2-017 84293604-84674997 protein_coding
  ENSMUST00000176264 Bnc2-021 84411179-84523693 processed_transcript
  ENSMUST00000176346 Bnc2-015 84390927-84674997 nonsense_mediated_decay
  ENSMUST00000176370 Bnc2-014 84546212-84674999 protein_coding
  ENSMUST00000176418 Bnc2-006 84293214-84674996 protein_coding
  ENSMUST00000176476 Bnc2-019 84293635-84533396 processed_transcript
  ENSMUST00000176601 Bnc2-009 84276444-84291868 protein_coding
  ENSMUST00000176612 Bnc2-004 84275352-84675275 protein_coding
  ENSMUST00000176691 Bnc2-001 84275610-84675086 protein_coding
  ENSMUST00000176702 Bnc2-011 84276245-84292146 protein_coding
  ENSMUST00000176947 Bnc2-016 84293577-84675027 protein_coding
  ENSMUST00000176971 Bnc2-012 84275380-84291757 protein_coding
  ENSMUST00000176998 Bnc2-008 84276444-84291868 protein_coding
  ENSMUST00000177040 Bnc2-020 84411154-84546290 protein_coding
  ENSMUST00000177256 Bnc2-018 84390959-84546619 processed_transcript
  ENSMUST00000177277 Bnc2-010 84276159-84291930 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102820ENSMUST00000107198ENSMUST00000175756ENSMUST00000175757ENSMUST00000175800ENSMUST00000175969ENSMUST00000176346ENSMUST00000176418ENSMUST00000176476ENSMUST00000176612ENSMUST00000176691ENSMUST00000176702ENSMUST00000176947ENSMUST00000176971ENSMUST00000177256
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102820 N/A N/A N/A N/A 0.443±0.00 N/A N/A N/A 0.045±0.00 N/A 0.103±0.00 N/A N/A N/A
ENSMUST00000107198 2.360±1.13 N/A 1.768±0.29 0.666±0.00 N/A N/A N/A 1.630±0.17 0.048±0.00 N/A N/A 3.079±1.51 0.276±0.00 0.635±0.00
ENSMUST00000175756 N/A N/A N/A N/A N/A 2.739±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175757 N/A N/A N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A 0.124±0.00 N/A N/A N/A
ENSMUST00000175800 N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A 0.058±0.00 N/A N/A 15.205±0.00 N/A N/A
ENSMUST00000175969 N/A 0.722±0.00 N/A 0.380±0.00 N/A 2.023±0.40 0.167±0.00 N/A N/A N/A N/A 23.172±1.42 0.095±0.00 N/A
ENSMUST00000176346 N/A N/A N/A N/A N/A N/A N/A N/A 0.103±0.00 N/A 0.273±0.00 N/A N/A N/A
ENSMUST00000176418 N/A N/A N/A N/A N/A 0.720±0.03 N/A N/A 0.049±0.01 N/A N/A N/A 0.213±0.05 N/A
ENSMUST00000176476 N/A 1.840±0.72 N/A N/A 3.669±0.00 4.006±0.58 N/A N/A 0.479±0.00 N/A N/A 29.905±5.43 N/A N/A
ENSMUST00000176612 N/A N/A N/A N/A N/A 0.170±0.00 0.069±0.00 N/A N/A 0.352±0.00 N/A 1.714±0.10 N/A N/A
ENSMUST00000176691 2.143±0.66 0.203±0.03 N/A N/A 1.100±0.37 0.576±0.13 0.144±0.05 4.686±0.80 0.036±0.02 0.831±0.14 0.123±0.06 4.932±1.27 N/A N/A
ENSMUST00000176702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.297±0.19 N/A
ENSMUST00000176947 N/A 0.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.419±4.43 N/A N/A
ENSMUST00000176971 5.334±2.33 1.197±0.34 N/A N/A 1.773±0.23 1.026±0.19 0.187±0.00 5.533±0.96 0.038±0.00 1.312±0.18 0.099±0.00 14.789±4.00 0.069±0.00 1.855±0.18
ENSMUST00000177256 N/A 0.852±0.00 N/A N/A N/A N/A 0.442±0.00 N/A 0.247±0.00 N/A N/A N/A 0.696±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0002 UCNEbase 4:83661885-85119123
CIL_0007VH CIL_0007VH_0002 VISTA 4:84229017-84829746
CIL_000148 CIL_000148_0002 CGP 4:84275095-85131921

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003416 IMP endochondral bone growth
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043586 IMP tongue development
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development
GO:0060485 IMP mesenchyme development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069989 bnc2 basonuclin 2 protein_coding Danio_rerio
ENSG00000173068 BNC2 basonuclin 2 protein_coding Homo_sapiens

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