C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: basonuclin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000173068 BNC2 9606 - 9:16409503-16870843 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000380666 BNC2-013 16437076-16868170 protein_coding
  ENST00000380667 BNC2-010 16418810-16870731 protein_coding
  ENST00000380672 BNC2-008 16409503-16870706 protein_coding
  ENST00000411752 BNC2-005 16418543-16436372 protein_coding
  ENST00000418777 BNC2-009 16418543-16727997 protein_coding
  ENST00000468187 BNC2-002 16579791-16727997 protein_coding
  ENST00000471301 BNC2-003 16579837-16705082 protein_coding
  ENST00000484726 BNC2-001 16418294-16870760 nonsense_mediated_decay
  ENST00000486514 BNC2-007 16552580-16870843 protein_coding
  ENST00000545497 BNC2-201 16418568-16870747 protein_coding
  ENST00000603313 BNC2-012 16552600-16728214 protein_coding
  ENST00000603713 BNC2-011 16437225-16728165 protein_coding
  ENST00000613349 BNC2-014 16583060-16867692 protein_coding
  ENST00000617779 BNC2-015 16583060-16867692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380667ENST00000380672ENST00000411752ENST00000418777ENST00000471301ENST00000545497ENST00000603713ENST00000617779
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380667 N/A 0.059±0.02 N/A 2.708±0.00 N/A N/A N/A N/A 8.686±0.00 N/A 0.240±0.00 2.269±0.00
ENST00000380672 0.656±0.00 0.088±0.00 0.778±0.34 1.446±0.59 0.127±0.00 1.188±0.00 3.102±0.00 0.666±0.08 0.414±0.00 2.404±2.15 0.435±0.30 0.934±0.14
ENST00000411752 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A N/A
ENST00000418777 N/A N/A N/A N/A N/A N/A N/A 0.771±0.00 4.123±0.00 N/A 0.201±0.00 N/A
ENST00000471301 N/A N/A N/A N/A N/A 1.985±0.00 N/A N/A N/A N/A N/A N/A
ENST00000545497 N/A N/A N/A N/A N/A N/A 3.294±0.00 0.934±0.00 N/A N/A N/A N/A
ENST00000603713 N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617779 N/A 0.180±0.00 N/A N/A N/A N/A N/A 4.651±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0001 UCNEbase 9:15728012-17487698
CIL_000148 CIL_000148_0001 CGP 9:16409503-17503923

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003416 IEA endochondral bone growth
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043586 IEA tongue development
GO:0046872 IEA metal ion binding
GO:0060021 IEA palate development
GO:0060485 IEA mesenchyme development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069989 bnc2 basonuclin 2 protein_coding Danio_rerio
ENSMUSG00000028487 Bnc2 basonuclin 2 protein_coding Mus_musculus

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