C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basonuclin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107198 Bnc2-007 ENSMUSG00000028487 10090 - 4:84275229-84675067 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverOvaryPlacentaTestisENSMUST00000107198
Transcript ID Adipose Bladder Brain Kidney Liver Ovary Placenta Testis
ENSMUST00000107198 2.360±1.13 1.768±0.29 0.666±0.00 1.630±0.17 0.048±0.00 3.079±1.51 0.276±0.00 0.635±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0002 UCNEbase 4:83661885-85119123
CIL_0007VH CIL_0007VH_0002 VISTA 4:84229017-84829746
CIL_000148 CIL_000148_0002 CGP 4:84275095-85131921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003416 IMP endochondral bone growth
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0043586 IMP tongue development
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development
GO:0060485 IMP mesenchyme development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380666 BNC2-013 protein_coding Homo_sapiens 0 1454
ENST00000380667 BNC2-010 protein_coding Homo_sapiens 0 4157
ENST00000380672 BNC2-008 protein_coding Homo_sapiens 0 5129
ENST00000411752 BNC2-005 protein_coding Homo_sapiens 0 1295
ENST00000418777 BNC2-009 protein_coding Homo_sapiens 0 3456
ENST00000468187 BNC2-002 protein_coding Homo_sapiens 0 496
ENST00000471301 BNC2-003 protein_coding Homo_sapiens 6e-34 148
ENST00000484726 BNC2-001 nonsense_mediated_decay Homo_sapiens 0 3736
ENST00000486514 BNC2-007 protein_coding Homo_sapiens 0 765
ENST00000545497 BNC2-201 protein_coding Homo_sapiens 0 3458
ENST00000603313 BNC2-012 protein_coding Homo_sapiens 0 745
ENST00000603713 BNC2-011 protein_coding Homo_sapiens 0 1312
ENST00000613349 BNC2-014 protein_coding Homo_sapiens 0 392
ENST00000617779 BNC2-015 protein_coding Homo_sapiens 0 518

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