C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: basonuclin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176971 Bnc2-012 ENSMUSG00000028487 10090 - 4:84275380-84291757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000176971
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000176971 5.334±2.33 1.197±0.34 1.773±0.23 1.026±0.19 0.187±0.00 5.533±0.96 0.038±0.00 1.312±0.18 0.099±0.00 14.789±4.00 0.069±0.00 1.855±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PP CIL_0007PP_0002 UCNEbase 4:83661885-85119123
CIL_0007VH CIL_0007VH_0002 VISTA 4:84229017-84829746
CIL_000148 CIL_000148_0002 CGP 4:84275095-85131921

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003416 IMP endochondral bone growth
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0043586 IMP tongue development
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development
GO:0060485 IMP mesenchyme development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380667 BNC2-010 protein_coding Homo_sapiens 0 1107
ENST00000380672 BNC2-008 protein_coding Homo_sapiens 0 1345
ENST00000411752 BNC2-005 protein_coding Homo_sapiens 0 1290
ENST00000418777 BNC2-009 protein_coding Homo_sapiens 0 1280
ENST00000484726 BNC2-001 nonsense_mediated_decay Homo_sapiens 0 1290
ENST00000545497 BNC2-201 protein_coding Homo_sapiens 0 1280

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