C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: mesoderm induction early response 1 homolog (Xenopus laevis
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028522 Mier1 10090 + 4:103114390-103165754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030247 Mier1-201 103115560-103165749 protein_coding
  ENSMUST00000097945 Mier1-013 103115638-103165749 protein_coding
  ENSMUST00000106855 Mier1-003 103143057-103162754 protein_coding
  ENSMUST00000106857 Mier1-009 103119286-103165752 protein_coding
  ENSMUST00000106858 Mier1-001 103114395-103165754 protein_coding
  ENSMUST00000124348 Mier1-012 103119410-103144423 retained_intron
  ENSMUST00000128536 Mier1-004 103158586-103162823 processed_transcript
  ENSMUST00000134533 Mier1-007 103115272-103127297 protein_coding
  ENSMUST00000136092 Mier1-014 103114390-103115904 processed_transcript
  ENSMUST00000137348 Mier1-008 103114431-103131021 processed_transcript
  ENSMUST00000143417 Mier1-006 103114762-103118302 protein_coding
  ENSMUST00000144219 Mier1-005 103114956-103118666 processed_transcript
  ENSMUST00000147491 Mier1-011 103117295-103118590 processed_transcript
  ENSMUST00000149259 Mier1-002 103114465-103143193 processed_transcript
  ENSMUST00000151588 Mier1-010 103119390-103142573 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030247ENSMUST00000106855ENSMUST00000106857ENSMUST00000106858ENSMUST00000128536ENSMUST00000149259
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030247 N/A N/A N/A 5.232±0.75 N/A N/A 0.695±0.00 1.309±0.00 1.701±0.82 3.121±0.00 0.865±0.36 4.389±1.26 N/A N/A
ENSMUST00000106855 N/A N/A N/A 24.672±0.00 N/A N/A N/A N/A N/A N/A N/A 53.587±31.56 64.284±5.29 83.589±0.00
ENSMUST00000106857 4.578±2.01 6.616±0.86 7.843±3.05 3.301±0.19 4.820±0.94 10.733±2.84 1.642±0.77 4.994±1.14 6.598±5.12 10.653±3.43 1.520±0.49 10.189±3.53 6.365±3.26 N/A
ENSMUST00000106858 N/A N/A N/A 1.137±0.00 N/A 2.381±0.00 N/A N/A 0.750±0.09 N/A N/A N/A N/A N/A
ENSMUST00000128536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.416±0.00 N/A N/A
ENSMUST00000149259 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.576±0.00 24.898±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000260 CIL_000260_0002 CGP 4:103017872-103114555
CIL_000261 CIL_000261_0002 CGP 4:103038065-103165754
CIL_00069G CIL_00069G_0002 CGP 4:103114390-103215164

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0017053 ISS transcriptional repressor complex
GO:0031937 ISS positive regulation of chromatin silencing
GO:0043123 IEA positive regulation of I-kappaB kinase/NF-kappaB signaling

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000001447 mier1b mesoderm induction early response 1b protein_coding Danio_rerio
ENSDARG00000041072 mier1a mesoderm induction early response 1 homolog a (Xenopus laevis) protein_coding Danio_rerio
ENSG00000198160 MIER1 mesoderm induction early response 1, transcriptional regulator protein_coding Homo_sapiens

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