C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028541 B4galt2 10090 - 4:117869260-117883487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030266 B4galt2-001 117873131-117883487 protein_coding
  ENSMUST00000084325 B4galt2-004 117869260-117883155 nonsense_mediated_decay
  ENSMUST00000106421 B4galt2-007 117873302-117883112 protein_coding
  ENSMUST00000137016 B4galt2-002 117881019-117883219 processed_transcript
  ENSMUST00000153358 B4galt2-006 117877580-117883155 protein_coding
  ENSMUST00000167443 B4galt2-005 117873021-117883476 nonsense_mediated_decay
  ENSMUST00000171548 B4galt2-003 117881393-117882291 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENSMUST00000030266ENSMUST00000084325ENSMUST00000106421ENSMUST00000153358ENSMUST00000167443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENSMUST00000030266 12.450±8.20 15.933±3.00 8.834±0.81 34.708±17.64 4.543±1.11 6.825±1.35 2.152±0.57 2.171±0.41 10.546±0.74 1.247±0.48 22.666±8.91 1.700±1.18 N/A
ENSMUST00000084325 N/A N/A N/A 10.859±0.10 N/A N/A N/A N/A N/A N/A 3.428±0.23 0.123±0.00 11.784±5.06
ENSMUST00000106421 4.593±0.68 N/A N/A N/A 3.832±0.53 N/A 1.745±0.56 N/A N/A 1.132±0.15 10.973±4.64 N/A N/A
ENSMUST00000153358 N/A N/A N/A N/A 7.509±0.27 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000167443 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.823±0.00 N/A 0.229±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0001PP CIL_0001PP_0002 CGP 4:117834506-117875198
CIL_000029 CIL_000029_0002 CGP 4:117869260-117887333

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003831 IEA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0003945 IEA N-acetyllactosamine synthase activity
GO:0004461 IEA lactose synthase activity
GO:0005794 IEA Golgi apparatus
GO:0005975 IEA carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077994 b4galt2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 protein_coding Danio_rerio
ENSG00000117411 B4GALT2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 protein_coding Homo_sapiens

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