C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084325 B4galt2-004 ENSMUSG00000028541 10090 - 4:117869260-117883155 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000084325
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000084325 10.859±0.10 3.428±0.23 0.123±0.00 11.784±5.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SF CIL_0008SF_0002 VISTA 4:117346906-117947610
CIL_0009B8 CIL_0009B8_0002 VISTA 4:117528714-118131599
CIL_0001PP CIL_0001PP_0002 CGP 4:117834506-117875198
CIL_000029 CIL_000029_0002 CGP 4:117869260-117887333

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003831 IEA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0003945 IEA N-acetyllactosamine synthase activity
GO:0004461 IEA lactose synthase activity
GO:0005794 IEA Golgi apparatus
GO:0005975 IEA carbohydrate metabolic process
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309519 B4GALT2-201 protein_coding Homo_sapiens 0 2021
ENST00000356836 B4GALT2-001 protein_coding Homo_sapiens 0 2017
ENST00000372310 SLC6A9-003 protein_coding Homo_sapiens 0.00000000004 75
ENST00000372318 CCDC24-001 protein_coding Homo_sapiens 0 307
ENST00000372324 B4GALT2-202 protein_coding Homo_sapiens 0 2021
ENST00000434555 B4GALT2-002 protein_coding Homo_sapiens 0 1555
ENST00000463846 CCDC24-003 nonsense_mediated_decay Homo_sapiens 0 200
ENST00000481924 B4GALT2-006 processed_transcript Homo_sapiens 0 595
ENST00000485678 B4GALT2-005 processed_transcript Homo_sapiens 0 1171
ENST00000486064 CCDC24-002 nonsense_mediated_decay Homo_sapiens 0 235
ENST00000490563 CCDC24-004 retained_intron Homo_sapiens 0 492
ENST00000497866 B4GALT2-004 processed_transcript Homo_sapiens 0 747
ENST00000498543 B4GALT2-003 processed_transcript Homo_sapiens 0 318

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