Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_000029_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSDARG00000077994-ENSDARG00000031681	CGP	7955	2:33194963-33405089
Gene	Transcript	Position	Biotype
ENSDARG00000031681 (atp6v0b) ATPase, H+ transporting, V0 subunit B	ENSDART00000147439 (atp6v0b-001)	33399074-33405089	protein_coding
ENSDARG00000077994 (b4galt2) UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	ENSDART00000114663 (b4galt2-201)	33194963-33363190	protein_coding
	ENSDART00000141192 (b4galt2-001)	33194963-33394369	protein_coding

CIL_000029_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000028541-ENSMUSG00000033379	CGP	10090	4:117869260-117887333
Gene	Transcript	Position	Biotype
ENSMUSG00000028541 (B4galt2) UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	ENSMUST00000030266 (B4galt2-001)	117873131-117883487	protein_coding
	ENSMUST00000084325 (B4galt2-004)	117869260-117883155	nonsense_mediated_decay
	ENSMUST00000106421 (B4galt2-007)	117873302-117883112	protein_coding
	ENSMUST00000137016 (B4galt2-002)	117881019-117883219	processed_transcript
	ENSMUST00000153358 (B4galt2-006)	117877580-117883155	protein_coding
	ENSMUST00000167443 (B4galt2-005)	117873021-117883476	nonsense_mediated_decay
	ENSMUST00000171548 (B4galt2-003)	117881393-117882291	protein_coding
ENSMUSG00000028542 (Slc6a9) solute carrier family 6 (neurotransmitter transporter, glycine), member 9	ENSMUST00000030269 (Slc6a9-001)	117835051-117869305	protein_coding
	ENSMUST00000063857 (Slc6a9-003)	117834506-117869296	protein_coding
	ENSMUST00000123994 (Slc6a9-011)	117855492-117857427	protein_coding
	ENSMUST00000132043 (Slc6a9-006)	117849193-117864004	protein_coding
	ENSMUST00000135769 (Slc6a9-007)	117855544-117856027	processed_transcript
	ENSMUST00000136476 (Slc6a9-008)	117835438-117857171	processed_transcript
	ENSMUST00000149168 (Slc6a9-002)	117835333-117875196	nonsense_mediated_decay
	ENSMUST00000151316 (Slc6a9-004)	117834995-117843109	protein_coding
	ENSMUST00000163288 (Slc6a9-010)	117849370-117868425	protein_coding
	ENSMUST00000169885 (Slc6a9-009)	117835397-117868337	protein_coding
	ENSMUST00000169990 (Slc6a9-013)	117849199-117864004	protein_coding
	ENSMUST00000170733 (Slc6a9-012)	117874082-117875198	retained_intron
ENSMUSG00000033379 (Atp6v0b) ATPase, H+ transporting, lysosomal V0 subunit B	ENSMUST00000036380 (Atp6v0b-001)	117884326-117887329	protein_coding
	ENSMUST00000124974 (Atp6v0b-004)	117885164-117886636	retained_intron
	ENSMUST00000132073 (Atp6v0b-006)	117885635-117887287	protein_coding
	ENSMUST00000133530 (Atp6v0b-002)	117884330-117885894	retained_intron
	ENSMUST00000136596 (Atp6v0b-008)	117886281-117887333	protein_coding
	ENSMUST00000147845 (Atp6v0b-005)	117886322-117887327	protein_coding
	ENSMUST00000149868 (Atp6v0b-009)	117885231-117886558	protein_coding
	ENSMUST00000150204 (Atp6v0b-007)	117884333-117887320	protein_coding
	ENSMUST00000152356 (Atp6v0b-003)	117884445-117885800	retained_intron
ENSMUSG00000078588 (Ccdc24) coiled-coil domain containing 24	ENSMUST00000106422 (Ccdc24-001)	117869260-117872554	protein_coding
	ENSMUST00000130758 (Ccdc24-003)	117869765-117871329	processed_transcript
	ENSMUST00000131938 (Ccdc24-004)	117870143-117872557	nonsense_mediated_decay
	ENSMUST00000154439 (Ccdc24-002)	117868749-117871295	retained_intron
	ENSMUST00000163974 (Ccdc24-009)	117867656-117868973	processed_transcript
	ENSMUST00000164853 (Ccdc24-006)	117866524-117872229	protein_coding
	ENSMUST00000166325 (Ccdc24-005)	117870540-117872520	protein_coding
	ENSMUST00000167287 (Ccdc24-007)	117869509-117871101	protein_coding
	ENSMUST00000171052 (Ccdc24-008)	117869624-117872520	protein_coding

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSDARG00000031681

ENSDART00000147439

N/A

49.437±14.20

N/A

13.863±5.26

10.782±1.54

3.026±0.00

N/A

10.537±0.00

N/A

ENSDARG00000077994

ENSDART00000114663

N/A

0.182±0.00

N/A

0.035±0.00

N/A

0.319±0.00

N/A

ENSDART00000141192

N/A

2.612±1.33

N/A

0.371±0.00

N/A

0.594±0.00

N/A

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000028541

ENSMUST00000030266

12.450±8.20

15.933±3.00

8.834±0.81

34.708±17.64

4.543±1.11

6.825±1.35

2.152±0.57

2.171±0.41

N/A

10.546±0.74

1.247±0.48

22.666±8.91

1.700±1.18

N/A

ENSMUST00000084325

N/A

10.859±0.10

N/A

3.428±0.23

0.123±0.00

11.784±5.06

ENSMUST00000106421

4.593±0.68

N/A

3.832±0.53

N/A

1.745±0.56

N/A

1.132±0.15

10.973±4.64

N/A

ENSMUST00000137016

N/A

ENSMUST00000153358

N/A

7.509±0.27

N/A

ENSMUST00000167443

N/A

0.823±0.00

N/A

0.229±0.00

N/A

ENSMUST00000171548

N/A

ENSMUSG00000028542

ENSMUST00000030269

N/A

7.807±0.00

N/A

ENSMUST00000063857

N/A

ENSMUST00000123994

N/A

27.039±2.31

N/A

ENSMUST00000132043

N/A

1.721±0.00

N/A

ENSMUST00000135769

N/A

ENSMUST00000136476

N/A

ENSMUST00000149168

N/A

6.419±0.00

N/A

7.142±3.12

N/A

ENSMUST00000151316

N/A

ENSMUST00000163288

6.335±4.08

N/A

7.142±0.00

N/A

3.077±0.37

7.868±0.25

N/A

2.524±0.33

15.262±11.09

13.048±0.07

N/A

23.044±2.68

2.496±0.00

N/A

ENSMUST00000169885

2.930±0.00

7.589±0.12

5.786±0.00

6.105±0.00

1.628±0.00

7.081±0.35

1.140±0.00

2.777±0.37

9.214±0.86

N/A

1.466±0.56

10.232±6.00

1.491±0.85

N/A

ENSMUST00000169990

N/A

ENSMUST00000170733

N/A

3.137±0.00

ENSMUSG00000033379

ENSMUST00000036380

141.954±10.72

303.821±15.52

99.018±30.41

136.035±62.57

120.114±31.37

189.433±33.23

92.296±10.59

278.323±10.04

113.214±16.47

171.294±21.41

57.883±3.25

108.527±39.72

114.395±68.89

81.395±11.08

ENSMUST00000124974

N/A

ENSMUST00000132073

N/A

ENSMUST00000133530

51.189±1.57

N/A

24.252±0.00

49.118±0.00

65.286±12.30

70.080±17.43

31.406±7.35

92.631±16.56

N/A

62.268±12.55

N/A

55.856±16.66

N/A

39.086±8.08

ENSMUST00000136596

N/A

ENSMUST00000147845

34.115±3.64

61.860±11.02

50.872±19.10

42.326±9.87

40.719±2.38

42.740±4.90

N/A

33.881±0.00

28.704±0.91

32.841±9.78

N/A

34.637±5.94

42.796±0.00

39.418±8.59

ENSMUST00000149868

N/A

33.258±0.64

N/A

ENSMUST00000150204

N/A

ENSMUST00000152356

N/A

ENSMUSG00000078588

ENSMUST00000106422

N/A

42.181±19.89

ENSMUST00000130758

N/A

ENSMUST00000131938

N/A

33.005±0.00

ENSMUST00000154439

N/A

ENSMUST00000163974

N/A

ENSMUST00000164853

4.732±3.29

5.805±0.98

4.755±1.74

N/A

2.079±0.27

4.935±1.03

0.803±0.24

1.743±0.44

6.534±4.95

10.396±1.25

0.364±0.04

10.056±3.87

1.018±0.55

N/A

ENSMUST00000166325

N/A

12.734±0.00

ENSMUST00000167287

N/A

ENSMUST00000171052

N/A

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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