C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol carrier protein 2, liver
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106701 Scp2-007 ENSMUSG00000028603 10090 - 4:108044550-108071419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106701
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106701 147.197±62.24 40.836±3.52 134.293±21.03 34.372±6.86 84.943±31.28 21.815±3.35 72.115±1.74 171.663±16.37 304.638±131.65 53.429±3.41 66.185±5.61 56.826±43.37 57.932±24.99 9.547±2.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005739 IDA mitochondrion
GO:0005777 TAS peroxisome
GO:0006637 TAS acyl-CoA metabolic process
GO:0007031 IMP peroxisome organization
GO:0033814 IEA propanoyl-CoA C-acyltransferase activity
GO:0050632 TAS propionyl-CoA C2-trimethyltridecanoyltransferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013079 scp2a-001 protein_coding Danio_rerio 0 243
ENST00000371509 SCP2-007 protein_coding Homo_sapiens 0 695
ENST00000371514 SCP2-001 protein_coding Homo_sapiens 0 695
ENST00000407246 SCP2-011 protein_coding Homo_sapiens 0 695
ENST00000430330 SCP2-008 protein_coding Homo_sapiens 0 606
ENST00000435345 SCP2-015 protein_coding Homo_sapiens 0 590
ENST00000478274 SCP2-006 protein_coding Homo_sapiens 0 481
ENST00000478631 SCP2-009 nonsense_mediated_decay Homo_sapiens 0 691
ENST00000528311 SCP2-010 protein_coding Homo_sapiens 0 695
ENST00000533119 SCP2-014 nonsense_mediated_decay Homo_sapiens 0 418

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