C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterol carrier protein 2, liver
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030340 Scp2-001 ENSMUSG00000028603 10090 - 4:108043839-108118532 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030340
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030340 33.114±8.95 10.613±2.71 21.307±2.77 6.523±0.93 20.706±2.58 10.486±1.16 22.655±0.61 45.417±1.49 97.175±70.23 12.272±1.48 26.612±0.94 19.815±4.14 13.210±7.16 3.928±0.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000062 IEA fatty-acyl-CoA binding
GO:0005102 IEA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005777 TAS peroxisome
GO:0006637 TAS acyl-CoA metabolic process
GO:0006694 IEA steroid biosynthetic process
GO:0006701 IEA progesterone biosynthetic process
GO:0007031 IMP peroxisome organization
GO:0008526 IEA phosphatidylinositol transporter activity
GO:0015485 IEA cholesterol binding
GO:0015914 IEA phospholipid transport
GO:0016020 IEA membrane
GO:0032385 IEA positive regulation of intracellular cholesterol transport
GO:0032959 IEA inositol trisphosphate biosynthetic process
GO:0033814 IEA propanoyl-CoA C-acyltransferase activity
GO:0036042 IEA long-chain fatty acyl-CoA binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0045940 IEA positive regulation of steroid metabolic process
GO:0050632 TAS propionyl-CoA C2-trimethyltridecanoyltransferase activity
GO:0070062 IEA extracellular vesicular exosome
GO:0070538 IEA oleic acid binding
GO:0072659 IEA protein localization to plasma membrane
GO:1901373 IEA lipid hydroperoxide transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000013079 scp2a-001 protein_coding Danio_rerio 0 494
ENST00000371509 SCP2-007 protein_coding Homo_sapiens 0 1502
ENST00000371513 SCP2-004 protein_coding Homo_sapiens 0 778
ENST00000371514 SCP2-001 protein_coding Homo_sapiens 0 1975
ENST00000407246 SCP2-011 protein_coding Homo_sapiens 0 1744
ENST00000430330 SCP2-008 protein_coding Homo_sapiens 0 713
ENST00000435345 SCP2-015 protein_coding Homo_sapiens 0 697
ENST00000473584 SCP2-003 processed_transcript Homo_sapiens 0 520
ENST00000478274 SCP2-006 protein_coding Homo_sapiens 0 481
ENST00000478631 SCP2-009 nonsense_mediated_decay Homo_sapiens 0 1131
ENST00000528311 SCP2-010 protein_coding Homo_sapiens 0 1701
ENST00000529363 SCP2-013 protein_coding Homo_sapiens 0 592
ENST00000533119 SCP2-014 nonsense_mediated_decay Homo_sapiens 0 516

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