C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: patched homolog 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123226 Ptch2-003 ENSMUSG00000028681 10090 + 4:117113424-117116101 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaENSMUST00000123226
Transcript ID Brain Liver Muscle Ovary Placenta
ENSMUST00000123226 0.081±0.00 0.238±0.00 0.099±0.04 0.437±0.08 0.090±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372192 PTCH2-001 protein_coding Homo_sapiens 0 459
ENST00000447098 PTCH2-201 protein_coding Homo_sapiens 0 279
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 2e-17 94
ENST00000473590 CTC-232H10.1-001 processed_pseudogene Homo_sapiens 6e-17 92
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 2e-21 106
ENST00000495837 RPL29P14-001 processed_pseudogene Homo_sapiens 0.000000000000009 84

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