C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of chromosome condensation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105951 Rcc1-003 ENSMUSG00000028896 10090 - 4:132331923-132351636 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalLiverLungOvaryTestisENSMUST00000105951
Transcript ID Adrenal Liver Lung Ovary Testis
ENSMUST00000105951 2.337±0.00 1.141±0.63 0.774±0.00 4.435±0.00 42.967±15.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001RA CIL_0001RA_0002 CGP 4:132331919-132422489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0031492 ISS nucleosomal DNA binding
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0051225 ISS spindle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373831 RCC1-004 protein_coding Homo_sapiens 0 1513
ENST00000373832 RCC1-001 protein_coding Homo_sapiens 0 1633
ENST00000373833 RCC1-003 protein_coding Homo_sapiens 0 1677
ENST00000398958 RCC1-201 protein_coding Homo_sapiens 0 1631
ENST00000411533 RCC1-006 protein_coding Homo_sapiens 0 1225
ENST00000419074 RCC1-005 protein_coding Homo_sapiens 0 1079
ENST00000427469 RCC1-012 protein_coding Homo_sapiens 0 885
ENST00000429051 RCC1-009 processed_transcript Homo_sapiens 0 562
ENST00000430407 RCC1-008 protein_coding Homo_sapiens 0 1059
ENST00000434290 RCC1-007 protein_coding Homo_sapiens 0 608
ENST00000478232 RCC1-010 retained_intron Homo_sapiens 0 448
ENST00000486790 RCC1-011 protein_coding Homo_sapiens 2e-26 122

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