C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001RA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000037158-ENSDARG00000032221 CGP 7955 16:36602962-36702455
GeneTranscriptPositionBiotype
ENSDARG00000032221 (phactr4b)
phosphatase and actin regulator 4b 		ENSDART00000044235 (phactr4b-001) 36616646-36702455 protein_coding
ENSDART00000081066 (phactr4b-201) 36615379-36682927 protein_coding
ENSDART00000145017 (phactr4b-003) 36622544-36630261 protein_coding
ENSDART00000145485 (phactr4b-002) 36651461-36676280 protein_coding
ENSDARG00000037158 (rcc1)
regulator of chromosome condensation 1 		ENSDART00000054026 (rcc1-001) 36602962-36612351 protein_coding
CIL_0001RA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028896-ENSMUSG00000066043 CGP 10090 4:132331919-132422489
GeneTranscriptPositionBiotype
ENSMUSG00000028896 (Rcc1)
regulator of chromosome condensation 1 		ENSMUST00000030726 (Rcc1-002) 132331923-132345705 protein_coding
ENSMUST00000084250 (Rcc1-001) 132331919-132345747 protein_coding
ENSMUST00000105951 (Rcc1-003) 132331923-132351636 protein_coding
ENSMUST00000131307 (Rcc1-006) 132338715-132345701 retained_intron
ENSMUST00000137238 (Rcc1-008) 132338961-132345357 retained_intron
ENSMUST00000155129 (Rcc1-004) 132337823-132353605 protein_coding
ENSMUST00000155194 (Rcc1-009) 132337656-132339932 processed_transcript
ENSMUST00000156710 (Rcc1-007) 132339491-132345692 retained_intron
ENSMUSG00000064387 (Snora73a)
small nucleolar RNA, H/ACA box 73a 		ENSMUST00000082453 (Snora73a-201) 132352775-132352979 snoRNA
ENSMUSG00000065353 (Snora73b)
small nucleolar RNA, H/ACA box 73b 		ENSMUST00000083419 (Snora73b-201) 132352322-132352526 snoRNA
ENSMUSG00000066043 (Phactr4)
phosphatase and actin regulator 4 		ENSMUST00000084170 (Phactr4-201) 132355930-132422446 protein_coding
ENSMUST00000084249 (Phactr4-002) 132358249-132398211 protein_coding
ENSMUST00000102568 (Phactr4-001) 132355923-132422489 protein_coding
ENSMUST00000127516 (Phactr4-005) 132360677-132370531 processed_transcript
ENSMUST00000136711 (Phactr4-004) 132377461-132398199 protein_coding
ENSMUST00000152271 (Phactr4-003) 132370951-132422441 protein_coding
ENSMUSG00000091021 (Gm17300)
predicted gene, 17300 		ENSMUST00000172202 (Gm17300-001) 132351772-132353382 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RA_0001ENSDARG00000032221ENSDART00000044235ENSDART00000081066ENSDART00000145017ENSDART00000145485ENSDARG00000037158ENSDART00000054026CIL_0001RA_0002ENSMUSG00000028896ENSMUST00000030726ENSMUST00000084250ENSMUST00000105951ENSMUST00000131307ENSMUST00000137238ENSMUST00000155129ENSMUST00000155194ENSMUST00000156710ENSMUSG00000064387ENSMUST00000082453ENSMUSG00000065353ENSMUST00000083419ENSMUSG00000066043ENSMUST00000084170ENSMUST00000084249ENSMUST00000102568ENSMUST00000127516ENSMUST00000136711ENSMUST00000152271ENSMUSG00000091021ENSMUST00000172202
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001RA_0001ENSDARG00000032221ENSDART00000044235ENSDART00000081066ENSDARG00000037158ENSDART00000054026CIL_0001RA_0002ENSMUSG00000028896ENSMUST00000030726ENSMUST00000084250ENSMUST00000105951ENSMUST00000155194ENSMUSG00000064387ENSMUST00000082453ENSMUSG00000065353ENSMUST00000083419ENSMUSG00000066043ENSMUST00000084170ENSMUST00000084249ENSMUST00000102568ENSMUST00000127516ENSMUST00000136711ENSMUSG00000091021ENSMUST00000172202
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000032221 ENSDART00000044235 N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A 0.551±0.00 N/A N/A N/A
ENSDART00000081066 N/A N/A N/A 2.080±0.00 N/A N/A 3.018±1.98 N/A N/A N/A 1.360±0.00 N/A N/A N/A
ENSDART00000145017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000145485 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000037158 ENSDART00000054026 N/A N/A N/A 2.636±0.41 N/A N/A 2.045±0.65 35.119±0.36 5.066±0.00 N/A 1.464±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028896 ENSMUST00000030726 1.579±0.65 N/A 1.142±0.00 N/A N/A N/A 0.369±0.00 0.986±0.22 2.416±2.12 N/A 1.353±0.19 1.840±0.30 4.336±2.62 7.636±0.00
ENSMUST00000084250 2.085±0.16 N/A 2.058±0.33 4.745±2.82 2.190±0.00 1.703±0.37 0.549±0.18 1.552±0.76 13.077±8.35 1.159±0.00 2.470±0.77 3.252±1.69 10.677±7.40 N/A
ENSMUST00000105951 N/A 2.337±0.00 N/A N/A N/A N/A N/A N/A 1.141±0.63 0.774±0.00 N/A 4.435±0.00 N/A 42.967±15.57
ENSMUST00000131307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155194 N/A N/A N/A 10.595±0.00 N/A N/A N/A N/A N/A N/A N/A 43.658±0.00 62.786±38.91 324.200±0.00
ENSMUST00000156710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064387 ENSMUST00000082453 N/A 30.801±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065353 ENSMUST00000083419 N/A 42.075±0.07 N/A N/A N/A N/A N/A N/A 24.889±4.75 N/A N/A N/A N/A N/A
ENSMUSG00000066043 ENSMUST00000084170 2.446±1.39 4.012±2.64 2.839±0.00 2.924±2.47 1.052±0.48 5.123±2.80 2.396±1.63 7.284±3.36 2.984±1.23 3.984±2.30 0.749±0.19 3.506±1.60 4.721±1.74 1.508±0.32
ENSMUST00000084249 N/A 1.898±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000102568 0.335±0.00 0.752±0.00 1.278±0.79 0.752±0.12 0.963±0.00 2.127±0.53 0.688±0.00 2.088±0.47 1.673±0.73 1.376±0.23 2.147±0.43 2.675±1.87 5.431±2.38 0.965±0.30
ENSMUST00000127516 N/A N/A N/A 5.853±0.00 N/A N/A N/A N/A N/A N/A N/A 27.145±0.00 29.688±5.74 19.334±0.00
ENSMUST00000136711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.684±0.00 N/A
ENSMUST00000152271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091021 ENSMUST00000172202 2.262±1.01 N/A 4.731±1.24 5.931±1.13 1.596±0.67 N/A 0.831±0.15 1.303±0.05 10.992±9.98 1.735±0.04 1.775±0.36 5.134±0.18 6.972±3.12 N/A

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