C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of chromosome condensation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030726 Rcc1-002 ENSMUSG00000028896 10090 - 4:132331923-132345705 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000030726
Transcript ID Adipose Bladder Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000030726 1.579±0.65 1.142±0.00 0.369±0.00 0.986±0.22 2.416±2.12 1.353±0.19 1.840±0.30 4.336±2.62 7.636±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001RA CIL_0001RA_0002 CGP 4:132331919-132422489

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IEA G1/S transition of mitotic cell cycle
GO:0000790 IEA nuclear chromatin
GO:0000794 IEA condensed nuclear chromosome
GO:0003682 IEA chromatin binding
GO:0005087 IDA Ran guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007052 IEA mitotic spindle organization
GO:0007059 IEA chromosome segregation
GO:0007088 IEA regulation of mitosis
GO:0031492 IEA nucleosomal DNA binding
GO:0031965 IEA nuclear membrane
GO:0032853 IDA positive regulation of Ran GTPase activity
GO:0042393 IEA histone binding
GO:0051225 IEA spindle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373831 RCC1-004 protein_coding Homo_sapiens 0 1513
ENST00000373832 RCC1-001 protein_coding Homo_sapiens 0 1511
ENST00000373833 RCC1-003 protein_coding Homo_sapiens 0 1511
ENST00000398958 RCC1-201 protein_coding Homo_sapiens 0 1511
ENST00000411533 RCC1-006 protein_coding Homo_sapiens 0 1343
ENST00000419074 RCC1-005 protein_coding Homo_sapiens 0 913
ENST00000427469 RCC1-012 protein_coding Homo_sapiens 0 765
ENST00000429051 RCC1-009 processed_transcript Homo_sapiens 0 562
ENST00000430407 RCC1-008 protein_coding Homo_sapiens 0 941
ENST00000434290 RCC1-007 protein_coding Homo_sapiens 0 488
ENST00000478232 RCC1-010 retained_intron Homo_sapiens 0 448
ENST00000486790 RCC1-011 protein_coding Homo_sapiens 5e-28 128

Loading