C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028899 Taf12 10090 + 4:132274375-132295766 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030731 Taf12-001 132274375-132295766 protein_coding
  ENSMUST00000105963 Taf12-003 132274416-132292712 protein_coding
  ENSMUST00000124365 Taf12-002 132274413-132276788 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030731ENSMUST00000105963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030731 2.608±0.28 0.690±0.20 2.796±0.31 2.586±0.52 1.665±0.31 1.598±0.44 1.429±0.20 2.631±0.26 3.638±2.81 1.890±0.26 1.687±0.20 2.031±0.86 3.294±0.65 2.091±0.80
ENSMUST00000105963 4.462±1.44 1.700±0.51 5.577±0.69 5.939±0.48 3.077±0.59 3.481±0.76 6.764±0.46 5.172±0.50 6.602±6.69 4.089±0.81 6.002±2.16 4.865±4.23 14.999±6.50 10.639±5.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001X2 CIL_0001X2_0002 CGP 4:132274375-132303385

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000125 IEA PCAF complex
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0004402 IEA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0030914 IDA STAGA complex
GO:0033276 IEA transcription factor TFTC complex
GO:0043966 IEA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054085 taf12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000120656 TAF12 TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa protein_coding Homo_sapiens

Loading