C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105963 Taf12-003 ENSMUSG00000028899 10090 + 4:132274416-132292712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105963 4.462±1.44 1.700±0.51 5.577±0.69 5.939±0.48 3.077±0.59 3.481±0.76 6.764±0.46 5.172±0.50 6.602±6.69 4.089±0.81 6.002±2.16 4.865±4.23 14.999±6.50 10.639±5.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001X2 CIL_0001X2_0002 CGP 4:132274375-132303385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0030914 IDA STAGA complex
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000154222 taf12-004 retained_intron Danio_rerio 0 276
ENSDART00000155673 taf12-002 protein_coding Danio_rerio 0 276
ENSDART00000156736 taf12-003 protein_coding Danio_rerio 0 276
ENSDART00000124208 taf12-001 protein_coding Danio_rerio 0 276
ENSDART00000123639 taf12-202 protein_coding Danio_rerio 0 265
ENSDART00000076222 taf12-201 protein_coding Danio_rerio 0 265
ENST00000263974 TAF12-001 protein_coding Homo_sapiens 0 841
ENST00000373824 TAF12-002 protein_coding Homo_sapiens 0 841
ENST00000471683 TAF12-003 processed_transcript Homo_sapiens 0 401
ENST00000495422 TAF12-004 processed_transcript Homo_sapiens 0 819

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