C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 3-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029034 Cpsf3l 10090 + 4:155869546-155889103 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030901 Cpsf3l-001 155869546-155889103 protein_coding
  ENSMUST00000120794 Cpsf3l-004 155869546-155888685 protein_coding
  ENSMUST00000132632 Cpsf3l-007 155888123-155888733 retained_intron
  ENSMUST00000134678 Cpsf3l-005 155869546-155888699 processed_transcript
  ENSMUST00000135844 Cpsf3l-006 155887779-155888487 retained_intron
  ENSMUST00000149458 Cpsf3l-002 155869567-155872312 retained_intron
  ENSMUST00000156460 Cpsf3l-003 155869615-155886919 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030901ENSMUST00000120794ENSMUST00000134678ENSMUST00000156460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030901 11.595±1.97 7.128±0.56 9.321±2.42 19.589±6.58 8.052±2.09 9.455±0.67 3.374±0.79 6.661±1.41 8.516±3.77 6.731±1.22 5.585±0.74 11.355±2.21 13.946±7.99 5.434±0.41
ENSMUST00000120794 7.966±0.00 N/A N/A 11.066±0.00 7.661±0.54 7.158±0.00 2.355±0.63 4.505±0.31 5.883±0.90 5.094±0.24 2.484±0.50 8.773±0.83 7.628±4.56 4.395±1.72
ENSMUST00000134678 N/A N/A 3.000±0.00 4.423±0.00 N/A N/A N/A N/A N/A N/A 1.549±0.00 3.878±0.00 N/A N/A
ENSMUST00000156460 N/A N/A N/A 13.409±0.00 N/A N/A N/A N/A N/A N/A N/A 15.649±0.00 15.631±4.63 17.343±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0016180 ISS snRNA processing
GO:0016787 IEA hydrolase activity
GO:0032039 ISS integrator complex
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025212 cpsf3l cleavage and polyadenylation specific factor 3-like protein_coding Danio_rerio
ENSG00000127054 CPSF3L cleavage and polyadenylation specific factor 3-like protein_coding Homo_sapiens

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