C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage and polyadenylation specific factor 3-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000127054 CPSF3L 9606 - 1:1311585-1324691 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000323275 CPSF3L-004 1311600-1324621 retained_intron
  ENST00000411962 CPSF3L-011 1311601-1324673 protein_coding
  ENST00000419704 CPSF3L-009 1311606-1324653 protein_coding
  ENST00000421495 CPSF3L-007 1311606-1324637 protein_coding
  ENST00000429572 CPSF3L-016 1318679-1324666 protein_coding
  ENST00000430786 CPSF3L-013 1314878-1324625 nonsense_mediated_decay
  ENST00000434694 CPSF3L-017 1313745-1324630 protein_coding
  ENST00000435064 CPSF3L-001 1311597-1324691 protein_coding
  ENST00000450926 CPSF3L-023 1311819-1324670 protein_coding
  ENST00000458452 CPSF3L-012 1311606-1324650 nonsense_mediated_decay
  ENST00000461514 CPSF3L-020 1312260-1313780 retained_intron
  ENST00000462432 CPSF3L-005 1311602-1317450 processed_transcript
  ENST00000467408 CPSF3L-019 1313546-1315601 retained_intron
  ENST00000470030 CPSF3L-008 1311585-1315433 retained_intron
  ENST00000470679 CPSF3L-025 1319470-1324603 nonsense_mediated_decay
  ENST00000478641 CPSF3L-006 1311606-1315170 retained_intron
  ENST00000485710 CPSF3L-022 1312080-1313825 retained_intron
  ENST00000488042 CPSF3L-018 1314413-1324629 retained_intron
  ENST00000490853 CPSF3L-014 1319381-1324649 processed_transcript
  ENST00000493534 CPSF3L-015 1319060-1324658 processed_transcript
  ENST00000496353 CPSF3L-003 1318697-1324611 retained_intron
  ENST00000497304 CPSF3L-021 1311598-1312700 retained_intron
  ENST00000498173 CPSF3L-002 1318681-1324687 retained_intron
  ENST00000498476 CPSF3L-031 1319403-1324660 protein_coding
  ENST00000525164 CPSF3L-048 1312265-1313765 retained_intron
  ENST00000525285 CPSF3L-036 1320478-1324613 nonsense_mediated_decay
  ENST00000525603 CPSF3L-026 1315560-1320905 retained_intron
  ENST00000525769 CPSF3L-047 1312286-1313750 retained_intron
  ENST00000526113 CPSF3L-040 1315004-1324637 retained_intron
  ENST00000526332 CPSF3L-038 1314827-1324660 protein_coding
  ENST00000526797 CPSF3L-037 1314826-1324658 nonsense_mediated_decay
  ENST00000526904 CPSF3L-039 1315146-1324658 retained_intron
  ENST00000527098 CPSF3L-024 1311823-1324666 nonsense_mediated_decay
  ENST00000527383 CPSF3L-043 1312939-1315608 nonsense_mediated_decay
  ENST00000527719 CPSF3L-030 1314916-1324671 protein_coding
  ENST00000528879 CPSF3L-046 1312284-1324648 nonsense_mediated_decay
  ENST00000530031 CPSF3L-034 1314918-1324659 protein_coding
  ENST00000530233 CPSF3L-035 1322771-1324658 retained_intron
  ENST00000531019 CPSF3L-033 1319381-1324660 nonsense_mediated_decay
  ENST00000531020 CPSF3L-045 1314136-1315141 retained_intron
  ENST00000531292 CPSF3L-044 1313059-1314664 retained_intron
  ENST00000531377 CPSF3L-042 1312787-1319346 nonsense_mediated_decay
  ENST00000532772 CPSF3L-029 1311627-1324628 nonsense_mediated_decay
  ENST00000532952 CPSF3L-027 1319347-1324642 processed_transcript
  ENST00000533916 CPSF3L-041 1314313-1315697 retained_intron
  ENST00000534345 CPSF3L-032 1319306-1324671 protein_coding
  ENST00000540437 CPSF3L-201 1311585-1324687 protein_coding
  ENST00000545578 CPSF3L-202 1311585-1324687 protein_coding
  ENST00000618806 CPSF3L-203 1311585-1324687 protein_coding
  ENST00000620829 CPSF3L-204 1311585-1324687 protein_coding

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000429572ENST00000430786ENST00000434694ENST00000435064ENST00000450926ENST00000462432ENST00000488042ENST00000526797ENST00000527098ENST00000527383ENST00000528879ENST00000532772ENST00000534345ENST00000618806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000429572 N/A N/A N/A N/A N/A N/A 2.596±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000430786 N/A N/A 5.222±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000434694 N/A N/A N/A N/A N/A 7.339±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000435064 N/A N/A N/A N/A N/A 3.662±0.00 16.429±0.00 14.376±0.00 9.141±0.00 14.423±0.00 17.787±13.82 32.968±20.40 23.981±11.42 44.122±17.86
ENST00000450926 42.664±0.00 37.676±0.00 N/A 16.674±0.00 27.494±0.00 N/A N/A N/A N/A 3.787±0.00 21.064±0.00 N/A N/A 34.857±0.00
ENST00000462432 N/A 16.084±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488042 N/A N/A N/A N/A N/A N/A N/A 3.816±0.00 N/A N/A N/A N/A N/A N/A
ENST00000526797 N/A N/A N/A N/A N/A N/A 4.268±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000527098 N/A N/A N/A N/A N/A N/A N/A N/A 3.773±0.00 N/A N/A N/A N/A N/A
ENST00000527383 N/A N/A N/A N/A N/A N/A N/A 4.948±0.00 N/A N/A 15.866±0.00 N/A N/A N/A
ENST00000528879 N/A N/A N/A N/A N/A N/A N/A 1.978±0.00 N/A N/A 15.344±10.51 N/A 7.562±0.00 N/A
ENST00000532772 N/A N/A N/A N/A N/A N/A N/A N/A 8.681±0.00 N/A N/A N/A N/A N/A
ENST00000534345 N/A N/A N/A N/A N/A 17.456±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000618806 N/A N/A N/A N/A N/A N/A N/A 2.193±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00059X CIL_00059X_0002 CGP 1:1292376-1311677
CIL_0001ML CIL_0001ML_0002 CGP 1:1311585-1328897

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0016180 IDA snRNA processing
GO:0016787 IEA hydrolase activity
GO:0032039 IDA integrator complex
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000025212 cpsf3l cleavage and polyadenylation specific factor 3-like protein_coding Danio_rerio
ENSMUSG00000029034 Cpsf3l cleavage and polyadenylation specific factor 3-like protein_coding Mus_musculus

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