C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 3-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156460 Cpsf3l-003 ENSMUSG00000029034 10090 + 4:155869615-155886919 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000156460
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000156460 13.409±0.00 15.649±0.00 15.631±4.63 17.343±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323275 CPSF3L-004 retained_intron Homo_sapiens 0 813
ENST00000411962 CPSF3L-011 protein_coding Homo_sapiens 0 560
ENST00000419704 CPSF3L-009 protein_coding Homo_sapiens 0 560
ENST00000421495 CPSF3L-007 protein_coding Homo_sapiens 0 418
ENST00000430786 CPSF3L-013 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000434694 CPSF3L-017 protein_coding Homo_sapiens 0 364
ENST00000435064 CPSF3L-001 protein_coding Homo_sapiens 0 737
ENST00000450926 CPSF3L-023 protein_coding Homo_sapiens 0 464
ENST00000458452 CPSF3L-012 nonsense_mediated_decay Homo_sapiens 0 737
ENST00000462432 CPSF3L-005 processed_transcript Homo_sapiens 0 566
ENST00000467408 CPSF3L-019 retained_intron Homo_sapiens 0 401
ENST00000470030 CPSF3L-008 retained_intron Homo_sapiens 0 361
ENST00000478641 CPSF3L-006 retained_intron Homo_sapiens 2e-39 169
ENST00000488042 CPSF3L-018 retained_intron Homo_sapiens 0 521
ENST00000525603 CPSF3L-026 retained_intron Homo_sapiens 0 270
ENST00000526113 CPSF3L-040 retained_intron Homo_sapiens 0 207
ENST00000526332 CPSF3L-038 protein_coding Homo_sapiens 0 514
ENST00000526797 CPSF3L-037 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000526904 CPSF3L-039 retained_intron Homo_sapiens 4e-39 165
ENST00000527098 CPSF3L-024 nonsense_mediated_decay Homo_sapiens 0 737
ENST00000527383 CPSF3L-043 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000527719 CPSF3L-030 protein_coding Homo_sapiens 0 442
ENST00000528879 CPSF3L-046 nonsense_mediated_decay Homo_sapiens 0 518
ENST00000530031 CPSF3L-034 protein_coding Homo_sapiens 0 442
ENST00000531292 CPSF3L-044 retained_intron Homo_sapiens 0 226
ENST00000531377 CPSF3L-042 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000532772 CPSF3L-029 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000533916 CPSF3L-041 retained_intron Homo_sapiens 0 398
ENST00000540437 CPSF3L-201 protein_coding Homo_sapiens 0 737
ENST00000545578 CPSF3L-202 protein_coding Homo_sapiens 0 737
ENST00000618806 CPSF3L-203 protein_coding Homo_sapiens 8.40779e-45 185
ENST00000620829 CPSF3L-204 protein_coding Homo_sapiens 0 560

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