C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 3-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030901 Cpsf3l-001 ENSMUSG00000029034 10090 + 4:155869546-155889103 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030901
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030901 11.595±1.97 7.128±0.56 9.321±2.42 19.589±6.58 8.052±2.09 9.455±0.67 3.374±0.79 6.661±1.41 8.516±3.77 6.731±1.22 5.585±0.74 11.355±2.21 13.946±7.99 5.434±0.41

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0016180 ISS snRNA processing
GO:0016787 IEA hydrolase activity
GO:0032039 ISS integrator complex
GO:0072562 IEA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323275 CPSF3L-004 retained_intron Homo_sapiens 0 1705
ENST00000411962 CPSF3L-011 protein_coding Homo_sapiens 0 1530
ENST00000419704 CPSF3L-009 protein_coding Homo_sapiens 0 1530
ENST00000421495 CPSF3L-007 protein_coding Homo_sapiens 0 1118
ENST00000430786 CPSF3L-013 nonsense_mediated_decay Homo_sapiens 0 782
ENST00000434694 CPSF3L-017 protein_coding Homo_sapiens 0 457
ENST00000435064 CPSF3L-001 protein_coding Homo_sapiens 0 2047
ENST00000450926 CPSF3L-023 protein_coding Homo_sapiens 0 1434
ENST00000458452 CPSF3L-012 nonsense_mediated_decay Homo_sapiens 0 2017
ENST00000462432 CPSF3L-005 processed_transcript Homo_sapiens 0 1168
ENST00000467408 CPSF3L-019 retained_intron Homo_sapiens 0 560
ENST00000470030 CPSF3L-008 retained_intron Homo_sapiens 0 558
ENST00000478641 CPSF3L-006 retained_intron Homo_sapiens 0 346
ENST00000488042 CPSF3L-018 retained_intron Homo_sapiens 0 861
ENST00000525603 CPSF3L-026 retained_intron Homo_sapiens 0 459
ENST00000526113 CPSF3L-040 retained_intron Homo_sapiens 0 207
ENST00000526332 CPSF3L-038 protein_coding Homo_sapiens 0 623
ENST00000526797 CPSF3L-037 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000526904 CPSF3L-039 retained_intron Homo_sapiens 4e-39 165
ENST00000527098 CPSF3L-024 nonsense_mediated_decay Homo_sapiens 0 2017
ENST00000527383 CPSF3L-043 nonsense_mediated_decay Homo_sapiens 0 647
ENST00000527719 CPSF3L-030 protein_coding Homo_sapiens 0 752
ENST00000528879 CPSF3L-046 nonsense_mediated_decay Homo_sapiens 0 881
ENST00000530031 CPSF3L-034 protein_coding Homo_sapiens 0 752
ENST00000531292 CPSF3L-044 retained_intron Homo_sapiens 0 484
ENST00000531377 CPSF3L-042 nonsense_mediated_decay Homo_sapiens 0 606
ENST00000532772 CPSF3L-029 nonsense_mediated_decay Homo_sapiens 0 1330
ENST00000533916 CPSF3L-041 retained_intron Homo_sapiens 0 398
ENST00000540437 CPSF3L-201 protein_coding Homo_sapiens 0 2017
ENST00000545578 CPSF3L-202 protein_coding Homo_sapiens 0 2017
ENST00000618806 CPSF3L-203 protein_coding Homo_sapiens 0 549
ENST00000620829 CPSF3L-204 protein_coding Homo_sapiens 0 1530

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