C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029038 Ssu72 10090 + 4:155704800-155733879 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030905 Ssu72-001 155704800-155733879 protein_coding
  ENSMUST00000105595 Ssu72-002 155705135-155732189 protein_coding
  ENSMUST00000140322 Ssu72-003 155705124-155716678 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030905ENSMUST00000105595ENSMUST00000140322
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030905 9.793±1.22 27.465±1.81 13.067±2.76 8.574±0.81 9.941±2.99 19.609±6.57 2.731±0.20 6.603±2.45 7.573±1.63 7.824±1.30 6.039±1.02 24.083±8.19 23.135±8.16 N/A
ENSMUST00000105595 43.031±2.28 90.674±14.45 46.182±8.03 68.320±38.78 48.068±19.61 69.782±5.16 18.429±2.87 38.469±5.63 31.228±4.74 54.232±9.15 10.223±0.81 64.585±27.78 134.728±124.51 19.742±2.80
ENSMUST00000140322 8.731±0.61 13.917±0.00 N/A 5.904±0.00 7.117±2.08 8.715±0.00 2.750±0.50 4.617±1.01 4.836±0.61 10.453±0.46 1.544±0.05 8.561±2.94 N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 ISS mRNA polyadenylation
GO:0008420 ISS CTD phosphatase activity
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031216 ssu72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000160075 SSU72 SSU72 RNA polymerase II CTD phosphatase homolog (S. cerevisiae) protein_coding Homo_sapiens

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