C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105595 Ssu72-002 ENSMUSG00000029038 10090 + 4:155705135-155732189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105595
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105595 43.031±2.28 90.674±14.45 46.182±8.03 68.320±38.78 48.068±19.61 69.782±5.16 18.429±2.87 38.469±5.63 31.228±4.74 54.232±9.15 10.223±0.81 64.585±27.78 134.728±124.51 19.742±2.80

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 ISS mRNA polyadenylation
GO:0008420 ISS CTD phosphatase activity
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291386 SSU72-001 protein_coding Homo_sapiens 0 654
ENST00000359060 SSU72-003 protein_coding Homo_sapiens 0 311
ENST00000378725 SSU72-004 retained_intron Homo_sapiens 0 486
ENST00000378726 SSU72-002 retained_intron Homo_sapiens 0 335
ENST00000473520 SSU72P8-001 processed_pseudogene Homo_sapiens 0 219
ENST00000524542 SSU72P2-001 processed_pseudogene Homo_sapiens 0 263
ENST00000530088 SSU72P4-001 processed_pseudogene Homo_sapiens 0 263
ENST00000531780 SSU72P3-001 processed_pseudogene Homo_sapiens 0 268
ENST00000532284 SSU72P7-001 processed_pseudogene Homo_sapiens 0 252
ENST00000532495 SSU72P5-001 processed_pseudogene Homo_sapiens 0 257
ENST00000532644 SSU72P6-001 processed_pseudogene Homo_sapiens 0 263

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