C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030905 Ssu72-001 ENSMUSG00000029038 10090 + 4:155704800-155733879 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000030905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000030905 9.793±1.22 27.465±1.81 13.067±2.76 8.574±0.81 9.941±2.99 19.609±6.57 2.731±0.20 6.603±2.45 7.573±1.63 7.824±1.30 6.039±1.02 24.083±8.19 23.135±8.16

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006378 ISS mRNA polyadenylation
GO:0008420 ISS CTD phosphatase activity
GO:0070940 ISS dephosphorylation of RNA polymerase II C-terminal domain

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000041895 ssu72-001 protein_coding Danio_rerio 0 444
ENST00000291386 SSU72-001 protein_coding Homo_sapiens 0 804
ENST00000359060 SSU72-003 protein_coding Homo_sapiens 0 311
ENST00000378725 SSU72-004 retained_intron Homo_sapiens 0 486
ENST00000378726 SSU72-002 retained_intron Homo_sapiens 0 484
ENST00000449911 SSU72P1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000473520 SSU72P8-001 processed_pseudogene Homo_sapiens 0 226
ENST00000524542 SSU72P2-001 processed_pseudogene Homo_sapiens 0 268
ENST00000530088 SSU72P4-001 processed_pseudogene Homo_sapiens 0 270
ENST00000531780 SSU72P3-001 processed_pseudogene Homo_sapiens 0 276
ENST00000532284 SSU72P7-001 processed_pseudogene Homo_sapiens 0 259
ENST00000532495 SSU72P5-001 processed_pseudogene Homo_sapiens 0 263
ENST00000532644 SSU72P6-001 processed_pseudogene Homo_sapiens 0 263

Loading