C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: negative elongation factor complex member A, Whsc2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029111 Nelfa 10090 - 5:33896936-33936413 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030993 Nelfa-001 33896936-33936413 protein_coding
  ENSMUST00000132942 Nelfa-002 33919125-33936250 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030993 9.084±4.57 17.159±2.40 8.790±1.71 18.908±9.74 14.489±5.63 16.952±2.57 4.098±1.66 8.425±1.46 11.119±5.33 12.287±3.89 2.175±0.17 21.665±8.27 11.727±3.46 12.135±4.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975
CIL_0006V9 CIL_0006V9_0002 CGP 5:33820725-33936413
CIL_0006V6 CIL_0006V6_0002 CGP 5:33896936-33985013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0032021 ISS NELF complex
GO:0034244 IMP negative regulation of transcription elongation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061411 nelfa negative elongation factor complex member A protein_coding Danio_rerio
ENSG00000185049 NELFA negative elongation factor complex member A protein_coding Homo_sapiens

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