C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006V8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168924-ENSG00000109685 CGP 9606 4:1811479-1982207
GeneTranscriptPositionBiotype
ENSG00000109685 (WHSC1)
Wolf-Hirschhorn syndrome candidate 1 		ENST00000312087 (WHSC1-007) 1892845-1982203 nonsense_mediated_decay
ENST00000353275 (WHSC1-002) 1892782-1982203 nonsense_mediated_decay
ENST00000382888 (WHSC1-005) 1952105-1978915 protein_coding
ENST00000382891 (WHSC1-201) 1892782-1982206 protein_coding
ENST00000382892 (WHSC1-202) 1892782-1982203 protein_coding
ENST00000382895 (WHSC1-008) 1892845-1982207 protein_coding
ENST00000398261 (WHSC1-203) 1900626-1948818 protein_coding
ENST00000420906 (WHSC1-006) 1892845-1942575 protein_coding
ENST00000436793 (WHSC1-204) 1900642-1912152 protein_coding
ENST00000482415 (WHSC1-003) 1939281-1979796 processed_transcript
ENST00000502425 (WHSC1-023) 1939752-1955221 processed_transcript
ENST00000503128 (WHSC1-004) 1899218-1948818 protein_coding
ENST00000503207 (WHSC1-021) 1953118-1956186 processed_transcript
ENST00000505643 (WHSC1-022) 1952105-1956158 processed_transcript
ENST00000507094 (WHSC1-020) 1955579-1958018 retained_intron
ENST00000507820 (WHSC1-013) 1871434-1900766 protein_coding
ENST00000508299 (WHSC1-019) 1976353-1978902 retained_intron
ENST00000508355 (WHSC1-009) 1871454-1919187 retained_intron
ENST00000508803 (WHSC1-011) 1871424-1978914 protein_coding
ENST00000509115 (WHSC1-015) 1900619-1918389 protein_coding
ENST00000511904 (WHSC1-016) 1918432-1951180 nonsense_mediated_decay
ENST00000512700 (WHSC1-012) 1900650-1918199 nonsense_mediated_decay
ENST00000513726 (WHSC1-017) 1930730-1953446 processed_transcript
ENST00000514045 (WHSC1-010) 1871461-1941750 protein_coding
ENST00000514329 (WHSC1-024) 1939661-1956188 protein_coding
ENST00000515695 (WHSC1-018) 1974787-1975646 retained_intron
ENST00000515806 (WHSC1-014) 1887501-1901251 protein_coding
ENSG00000168924 (LETM1)
leucine zipper-EF-hand containing transmembrane protein 1 		ENST00000302787 (LETM1-001) 1811479-1856247 protein_coding
ENST00000466175 (LETM1-002) 1834100-1855955 retained_intron
ENST00000505551 (LETM1-003) 1833074-1843211 retained_intron
ENST00000510940 (LETM1-007) 1819372-1822642 retained_intron
ENST00000511977 (LETM1-006) 1822774-1832879 retained_intron
ENST00000512189 (LETM1-005) 1846474-1855971 processed_transcript
ENST00000512669 (LETM1-004) 1834206-1839342 retained_intron
ENSG00000249784 (SCARNA22)
small Cajal body-specific RNA 22 		ENST00000503991 (SCARNA22-201) 1974636-1974760 snoRNA
CIL_0006V8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000005299-ENSMUSG00000057406 CGP 10090 5:33739673-33897975
GeneTranscriptPositionBiotype
ENSMUSG00000005299 (Letm1)
leucine zipper-EF-hand containing transmembrane protein 1 		ENSMUST00000005431 (Letm1-001) 33739673-33782817 protein_coding
ENSMUST00000144071 (Letm1-004) 33769562-33770454 processed_transcript
ENSMUST00000148451 (Letm1-002) 33776455-33782737 retained_intron
ENSMUST00000149886 (Letm1-003) 33742534-33753562 retained_intron
ENSMUSG00000029111 (Nelfa)
negative elongation factor complex member A, Whsc2 		ENSMUST00000030993 (Nelfa-001) 33896936-33936413 protein_coding
ENSMUST00000132942 (Nelfa-002) 33919125-33936250 retained_intron
ENSMUSG00000057406 (Whsc1)
Wolf-Hirschhorn syndrome candidate 1 (human) 		ENSMUST00000058096 (Whsc1-002) 33843141-33895712 protein_coding
ENSMUST00000066854 (Whsc1-201) 33843112-33897966 protein_coding
ENSMUST00000075812 (Whsc1-001) 33820725-33897966 protein_coding
ENSMUST00000114397 (Whsc1-004) 33820744-33872502 protein_coding
ENSMUST00000114399 (Whsc1-009) 33843112-33877282 protein_coding
ENSMUST00000133870 (Whsc1-010) 33885498-33887703 retained_intron
ENSMUST00000137191 (Whsc1-007) 33843112-33897975 nonsense_mediated_decay
ENSMUST00000139845 (Whsc1-006) 33843112-33897975 nonsense_mediated_decay
ENSMUST00000141416 (Whsc1-003) 33843196-33895495 nonsense_mediated_decay
ENSMUST00000142080 (Whsc1-005) 33861069-33877290 protein_coding
ENSMUST00000155880 (Whsc1-008) 33820829-33846182 protein_coding
ENSMUSG00000059064 (Gm10059)
predicted pseudogene 10059 		ENSMUST00000131139 (Gm10059-001) 33759366-33759533 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V8_0001ENSG00000109685ENST00000312087ENST00000353275ENST00000382888ENST00000382891ENST00000382892ENST00000382895ENST00000398261ENST00000420906ENST00000436793ENST00000482415ENST00000502425ENST00000503128ENST00000503207ENST00000505643ENST00000507094ENST00000507820ENST00000508299ENST00000508355ENST00000508803ENST00000509115ENST00000511904ENST00000512700ENST00000513726ENST00000514045ENST00000514329ENST00000515695ENST00000515806ENSG00000168924ENST00000302787ENST00000466175ENST00000505551ENST00000510940ENST00000511977ENST00000512189ENST00000512669ENSG00000249784ENST00000503991CIL_0006V8_0002ENSMUSG00000005299ENSMUST00000005431ENSMUST00000144071ENSMUST00000148451ENSMUST00000149886ENSMUSG00000029111ENSMUST00000030993ENSMUST00000132942ENSMUSG00000057406ENSMUST00000058096ENSMUST00000066854ENSMUST00000075812ENSMUST00000114397ENSMUST00000114399ENSMUST00000133870ENSMUST00000137191ENSMUST00000139845ENSMUST00000141416ENSMUST00000142080ENSMUST00000155880ENSMUSG00000059064ENSMUST00000131139
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V8_0001ENSG00000109685ENST00000312087ENST00000353275ENST00000382888ENST00000382891ENST00000382892ENST00000398261ENST00000420906ENST00000482415ENST00000503128ENST00000508355ENST00000508803ENST00000509115ENST00000511904ENST00000514045ENSG00000168924ENST00000302787ENSG00000249784ENST00000503991CIL_0006V8_0002ENSMUSG00000005299ENSMUST00000005431ENSMUST00000149886ENSMUSG00000029111ENSMUST00000030993ENSMUSG00000057406ENSMUST00000058096ENSMUST00000066854ENSMUST00000075812ENSMUST00000114399ENSMUST00000141416ENSMUST00000142080ENSMUSG00000059064ENSMUST00000131139
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109685 ENST00000312087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.858±0.00 N/A N/A N/A
ENST00000353275 N/A N/A N/A N/A N/A N/A N/A 0.538±0.24 N/A N/A N/A N/A N/A N/A
ENST00000382888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.612±0.00 N/A N/A
ENST00000382891 N/A 1.161±0.00 N/A N/A 1.707±0.00 2.916±0.00 1.203±0.55 0.957±0.00 0.736±0.00 N/A 0.337±0.00 3.614±1.35 4.139±1.77 7.503±0.00
ENST00000382892 N/A N/A N/A N/A N/A N/A N/A 1.298±0.00 N/A N/A N/A N/A 0.720±0.00 N/A
ENST00000382895 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000398261 0.728±0.00 N/A 0.242±0.00 2.530±1.24 N/A 1.330±0.00 0.890±0.00 0.347±0.00 0.366±0.19 N/A 0.265±0.00 1.345±0.00 N/A 1.527±0.00
ENST00000420906 N/A N/A 0.320±0.00 2.020±0.00 N/A 1.800±0.00 N/A N/A 0.788±0.00 0.957±0.00 N/A N/A N/A N/A
ENST00000436793 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482415 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A 3.191±0.00 N/A 5.663±0.00
ENST00000502425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503128 N/A N/A 0.275±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507094 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507820 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508355 N/A N/A 0.859±0.00 N/A N/A N/A N/A N/A N/A 1.295±0.00 N/A N/A N/A N/A
ENST00000508803 4.785±0.00 2.232±0.00 0.610±0.00 N/A 3.048±0.30 3.235±0.00 N/A N/A 1.370±0.80 2.150±0.00 2.662±0.00 2.688±0.00 N/A 17.586±10.97
ENST00000509115 N/A N/A N/A N/A N/A N/A 2.028±0.00 1.933±0.00 N/A N/A 1.054±0.00 N/A N/A N/A
ENST00000511904 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.180±0.00 N/A N/A N/A
ENST00000512700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514045 N/A N/A N/A N/A N/A N/A 0.625±0.00 0.577±0.00 N/A N/A N/A N/A N/A N/A
ENST00000514329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515695 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000168924 ENST00000302787 5.493±0.00 5.305±0.00 0.733±0.00 5.998±3.20 4.704±3.27 5.383±2.44 5.398±1.97 5.083±4.66 6.653±0.00 4.007±2.09 8.361±0.00 6.641±4.05 4.324±2.72 11.078±5.91
ENST00000466175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512189 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512669 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249784 ENST00000503991 0.195±0.00 N/A 33.242±0.00 39.810±0.00 191.953±0.00 392.896±0.00 28.950±28.77 90.878±0.00 12.620±0.00 N/A 64.325±0.00 20.800±18.87 1.339±0.00 1.696±0.75
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005299 ENSMUST00000005431 14.395±1.44 23.872±3.25 3.205±0.01 18.052±10.88 13.099±2.55 25.167±1.51 12.917±0.87 21.522±1.13 7.398±5.56 8.961±2.69 3.747±0.28 12.098±3.89 11.972±7.82 3.275±1.20
ENSMUST00000144071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148451 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149886 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.307±0.00 2.664±0.00 N/A
ENSMUSG00000029111 ENSMUST00000030993 9.084±4.57 17.159±2.40 8.790±1.71 18.908±9.74 14.489±5.63 16.952±2.57 4.098±1.66 8.425±1.46 11.119±5.33 12.287±3.89 2.175±0.17 21.665±8.27 11.727±3.46 12.135±4.18
ENSMUST00000132942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057406 ENSMUST00000058096 N/A N/A N/A N/A N/A N/A N/A N/A 4.814±1.82 N/A 0.591±0.05 5.109±0.05 10.725±6.32 8.984±5.06
ENSMUST00000066854 1.085±0.03 N/A N/A 10.982±0.42 2.380±0.05 N/A 0.623±0.00 N/A 4.190±0.00 N/A 0.351±0.00 3.154±0.33 N/A N/A
ENSMUST00000075812 N/A 3.777±0.12 N/A 4.665±0.00 N/A 3.138±0.28 1.033±0.13 1.739±0.40 2.585±1.42 N/A 0.384±0.09 5.389±2.14 4.507±2.10 4.316±0.62
ENSMUST00000114397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114399 N/A N/A N/A 1.627±0.00 N/A N/A N/A N/A N/A N/A 0.407±0.00 N/A N/A N/A
ENSMUST00000133870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.473±0.00
ENSMUST00000142080 1.336±0.14 N/A 1.894±0.60 18.752±0.64 0.893±0.00 N/A 1.018±0.37 1.338±0.13 2.879±0.78 N/A 0.431±0.06 2.019±0.63 3.258±0.70 N/A
ENSMUST00000155880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059064 ENSMUST00000131139 N/A 32.315±0.00 5.513±0.00 1.109±0.00 107.386±0.00 N/A 15.130±0.00 N/A 4.943±1.53 81.221±0.00 N/A 29.051±35.12 10.513±1.76 N/A

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