C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member A, Whsc2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030993 Nelfa-001 ENSMUSG00000029111 10090 - 5:33896936-33936413 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030993
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030993 9.084±4.57 17.159±2.40 8.790±1.71 18.908±9.74 14.489±5.63 16.952±2.57 4.098±1.66 8.425±1.46 11.119±5.33 12.287±3.89 2.175±0.17 21.665±8.27 11.727±3.46 12.135±4.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006V8 CIL_0006V8_0002 CGP 5:33739673-33897975
CIL_0006V9 CIL_0006V9_0002 CGP 5:33820725-33936413
CIL_0006V6 CIL_0006V6_0002 CGP 5:33896936-33985013

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0032021 ISS NELF complex
GO:0034244 IMP negative regulation of transcription elongation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333877 NELFA-002 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000382882 NELFA-001 protein_coding Homo_sapiens 0 1666
ENST00000411638 NELFA-015 protein_coding Homo_sapiens 0 1620
ENST00000416258 NELFA-003 protein_coding Homo_sapiens 0 1327
ENST00000463820 NELFA-004 retained_intron Homo_sapiens 0 1327
ENST00000467661 NELFA-005 retained_intron Homo_sapiens 0 917
ENST00000542778 NELFA-201 protein_coding Homo_sapiens 0 1666

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