C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006V6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000185049-ENSG00000243449 CGP 9606 4:1982714-2043970
GeneTranscriptPositionBiotype
ENSG00000185049 (NELFA)
negative elongation factor complex member A 		ENST00000333877 (NELFA-002) 1982730-2009183 nonsense_mediated_decay
ENST00000382882 (NELFA-001) 1982714-2010110 protein_coding
ENST00000411638 (NELFA-015) 1982723-2008975 protein_coding
ENST00000411649 (NELFA-010) 1987942-2008835 protein_coding
ENST00000416258 (NELFA-003) 1982730-1992624 protein_coding
ENST00000421397 (NELFA-009) 1986382-2008848 nonsense_mediated_decay
ENST00000431323 (NELFA-006) 1986114-2008997 protein_coding
ENST00000443203 (NELFA-007) 1991588-2008972 nonsense_mediated_decay
ENST00000453740 (NELFA-012) 1984808-1990501 protein_coding
ENST00000455762 (NELFA-011) 1986115-2041903 protein_coding
ENST00000458616 (NELFA-008) 2003838-2008942 nonsense_mediated_decay
ENST00000463820 (NELFA-004) 1982730-1992244 retained_intron
ENST00000467661 (NELFA-005) 1982723-1986560 retained_intron
ENST00000484545 (NELFA-014) 1987501-1989756 retained_intron
ENST00000488452 (NELFA-013) 1986280-1990054 retained_intron
ENST00000542778 (NELFA-201) 1982717-2009235 protein_coding
ENSG00000243449 (C4orf48)
chromosome 4 open reading frame 48 		ENST00000409248 (C4orf48-001) 2041993-2043970 protein_coding
ENST00000409860 (C4orf48-002) 2042050-2043964 protein_coding
CIL_0006V6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029111-ENSMUSG00000070858 CGP 10090 5:33896936-33985013
GeneTranscriptPositionBiotype
ENSMUSG00000029111 (Nelfa)
negative elongation factor complex member A, Whsc2 		ENSMUST00000030993 (Nelfa-001) 33896936-33936413 protein_coding
ENSMUST00000132942 (Nelfa-002) 33919125-33936250 retained_intron
ENSMUSG00000057406 (Whsc1)
Wolf-Hirschhorn syndrome candidate 1 (human) 		ENSMUST00000058096 (Whsc1-002) 33843141-33895712 protein_coding
ENSMUST00000066854 (Whsc1-201) 33843112-33897966 protein_coding
ENSMUST00000075812 (Whsc1-001) 33820725-33897966 protein_coding
ENSMUST00000114397 (Whsc1-004) 33820744-33872502 protein_coding
ENSMUST00000114399 (Whsc1-009) 33843112-33877282 protein_coding
ENSMUST00000133870 (Whsc1-010) 33885498-33887703 retained_intron
ENSMUST00000137191 (Whsc1-007) 33843112-33897975 nonsense_mediated_decay
ENSMUST00000139845 (Whsc1-006) 33843112-33897975 nonsense_mediated_decay
ENSMUST00000141416 (Whsc1-003) 33843196-33895495 nonsense_mediated_decay
ENSMUST00000142080 (Whsc1-005) 33861069-33877290 protein_coding
ENSMUST00000155880 (Whsc1-008) 33820829-33846182 protein_coding
ENSMUSG00000070858 (Gm1673)
predicted gene 1673 		ENSMUST00000094869 (Gm1673-001) 33983466-33985013 protein_coding
ENSMUST00000114382 (Gm1673-005) 33983534-33985009 protein_coding
ENSMUST00000114383 (Gm1673-002) 33983470-33985009 protein_coding
ENSMUST00000114384 (Gm1673-003) 33983437-33985009 protein_coding
ENSMUST00000142510 (Gm1673-004) 33983510-33985010 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V6_0001ENSG00000185049ENST00000333877ENST00000382882ENST00000411638ENST00000411649ENST00000416258ENST00000421397ENST00000431323ENST00000443203ENST00000453740ENST00000455762ENST00000458616ENST00000463820ENST00000467661ENST00000484545ENST00000488452ENST00000542778ENSG00000243449ENST00000409248ENST00000409860CIL_0006V6_0002ENSMUSG00000029111ENSMUST00000030993ENSMUST00000132942ENSMUSG00000057406ENSMUST00000058096ENSMUST00000066854ENSMUST00000075812ENSMUST00000114397ENSMUST00000114399ENSMUST00000133870ENSMUST00000137191ENSMUST00000139845ENSMUST00000141416ENSMUST00000142080ENSMUST00000155880ENSMUSG00000070858ENSMUST00000094869ENSMUST00000114382ENSMUST00000114383ENSMUST00000114384ENSMUST00000142510
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V6_0001ENSG00000185049ENST00000333877ENST00000382882ENST00000411638ENST00000411649ENST00000421397ENST00000431323ENST00000443203ENST00000453740ENST00000463820ENST00000467661ENST00000484545ENST00000542778ENSG00000243449ENST00000409248ENST00000409860CIL_0006V6_0002ENSMUSG00000029111ENSMUST00000030993ENSMUSG00000057406ENSMUST00000058096ENSMUST00000066854ENSMUST00000075812ENSMUST00000114399ENSMUST00000141416ENSMUST00000142080ENSMUSG00000070858ENSMUST00000094869ENSMUST00000114382ENSMUST00000114383ENSMUST00000114384ENSMUST00000142510
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000185049 ENST00000333877 N/A N/A N/A N/A N/A N/A 1.002±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000382882 N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A 0.207±0.00 N/A N/A N/A N/A N/A
ENST00000411638 11.356±0.00 13.801±0.00 0.487±0.00 3.349±3.05 7.647±0.00 3.672±2.48 1.948±0.00 6.210±0.00 1.627±0.56 4.753±4.15 11.457±0.00 19.745±3.12 13.362±2.87 17.228±1.83
ENST00000411649 N/A N/A 1.053±0.00 0.989±0.00 1.042±0.00 N/A N/A N/A N/A N/A N/A 1.544±0.00 N/A N/A
ENST00000416258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421397 N/A N/A N/A 1.171±0.00 N/A N/A 0.179±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000431323 N/A N/A N/A N/A N/A N/A N/A N/A 0.784±0.00 1.568±0.00 N/A N/A N/A N/A
ENST00000443203 N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453740 N/A N/A N/A 12.151±0.00 N/A 2.950±2.16 0.169±0.00 10.948±0.00 N/A N/A N/A 0.668±0.00 4.331±0.00 21.904±7.69
ENST00000455762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463820 N/A N/A N/A N/A 1.361±1.19 1.279±0.00 0.132±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000467661 N/A N/A N/A 0.291±0.00 N/A N/A N/A 1.284±0.00 0.865±0.00 N/A N/A 0.229±0.00 N/A 6.400±0.00
ENST00000484545 N/A N/A N/A N/A N/A N/A N/A 2.034±0.00 N/A N/A N/A N/A N/A N/A
ENST00000488452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542778 N/A N/A N/A N/A N/A N/A 0.704±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000243449 ENST00000409248 3.208±0.00 5.071±0.00 N/A 9.078±3.59 8.435±0.00 1.969±0.00 1.171±0.85 13.793±0.00 3.965±0.00 13.955±0.00 0.300±0.00 8.085±8.46 14.196±4.01 13.748±8.20
ENST00000409860 N/A N/A N/A 3.892±2.03 N/A 2.614±0.00 0.795±0.00 N/A N/A N/A N/A 1.314±0.00 4.768±0.00 5.835±0.47
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029111 ENSMUST00000030993 9.084±4.57 17.159±2.40 8.790±1.71 18.908±9.74 14.489±5.63 16.952±2.57 4.098±1.66 8.425±1.46 11.119±5.33 12.287±3.89 2.175±0.17 21.665±8.27 11.727±3.46 12.135±4.18
ENSMUST00000132942 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000057406 ENSMUST00000058096 N/A N/A N/A N/A N/A N/A N/A N/A 4.814±1.82 N/A 0.591±0.05 5.109±0.05 10.725±6.32 8.984±5.06
ENSMUST00000066854 1.085±0.03 N/A N/A 10.982±0.42 2.380±0.05 N/A 0.623±0.00 N/A 4.190±0.00 N/A 0.351±0.00 3.154±0.33 N/A N/A
ENSMUST00000075812 N/A 3.777±0.12 N/A 4.665±0.00 N/A 3.138±0.28 1.033±0.13 1.739±0.40 2.585±1.42 N/A 0.384±0.09 5.389±2.14 4.507±2.10 4.316±0.62
ENSMUST00000114397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000114399 N/A N/A N/A 1.627±0.00 N/A N/A N/A N/A N/A N/A 0.407±0.00 N/A N/A N/A
ENSMUST00000133870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137191 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139845 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.473±0.00
ENSMUST00000142080 1.336±0.14 N/A 1.894±0.60 18.752±0.64 0.893±0.00 N/A 1.018±0.37 1.338±0.13 2.879±0.78 N/A 0.431±0.06 2.019±0.63 3.258±0.70 N/A
ENSMUST00000155880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070858 ENSMUST00000094869 3.620±1.28 40.585±18.76 1.979±0.51 54.860±31.97 2.654±1.07 1.134±0.30 1.560±0.57 0.937±0.52 0.763±0.47 3.835±0.38 0.168±0.05 16.690±5.15 2.410±0.55 27.222±10.48
ENSMUST00000114382 0.780±0.00 N/A N/A N/A 0.985±0.03 N/A 1.448±0.00 1.023±0.00 0.152±0.04 N/A N/A N/A 1.387±0.07 N/A
ENSMUST00000114383 5.215±2.86 20.684±6.42 3.541±0.49 122.020±87.46 3.359±1.22 2.468±1.08 1.500±0.36 0.812±0.32 1.226±1.02 4.168±0.40 N/A 25.740±9.28 3.744±1.53 44.931±21.30
ENSMUST00000114384 0.810±0.30 6.120±1.57 N/A 27.503±9.54 0.833±0.00 0.453±0.06 0.245±0.00 0.216±0.06 0.258±0.00 0.986±0.25 N/A 5.456±1.49 N/A 8.727±0.01
ENSMUST00000142510 N/A N/A N/A N/A N/A N/A N/A 0.533±0.00 0.694±0.00 N/A 0.237±0.16 2.154±0.00 2.715±0.82 N/A

Loading