C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000029173 Sepsecs 10090 - 5:52640087-52669729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000031069 Sepsecs-001 52640087-52669729 protein_coding
  ENSMUST00000123856 Sepsecs-003 52656343-52669615 nonsense_mediated_decay
  ENSMUST00000126574 Sepsecs-004 52644049-52666000 nonsense_mediated_decay
  ENSMUST00000150709 Sepsecs-002 52640089-52669707 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031069ENSMUST00000150709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031069 4.183±1.02 2.482±0.85 2.638±0.17 1.805±0.49 3.159±1.26 3.937±1.25 1.581±0.20 5.233±0.68 8.479±4.11 5.352±0.59 1.738±0.45 2.149±0.49 3.600±1.81 3.735±0.96
ENSMUST00000150709 1.595±0.40 1.973±0.00 N/A 0.184±0.00 1.537±1.00 1.415±0.00 N/A 2.514±0.58 4.237±2.08 0.881±0.23 0.755±0.41 1.320±0.78 1.399±0.55 1.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OX CIL_0002OX_0002 CGP 5:52640087-52769344

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0001514 IDA selenocysteine incorporation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0016785 IEA transferase activity, transferring selenium-containing groups
GO:0030170 IEA pyridoxal phosphate binding
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033861 sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein_coding Danio_rerio
ENSG00000109618 SEPSECS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein_coding Homo_sapiens

Loading