C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000150709 Sepsecs-002 ENSMUSG00000029173 10090 - 5:52640089-52669707 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000150709
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000150709 1.595±0.40 1.973±0.00 0.184±0.00 1.537±1.00 1.415±0.00 2.514±0.58 4.237±2.08 0.881±0.23 0.755±0.41 1.320±0.78 1.399±0.55 1.413±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OX CIL_0002OX_0002 CGP 5:52640087-52769344

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016785 IEA transferase activity, transferring selenium-containing groups
GO:0097056 IEA selenocysteinyl-tRNA(Sec) biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358971 SEPSECS-003 nonsense_mediated_decay Homo_sapiens 0 1352
ENST00000382103 SEPSECS-001 protein_coding Homo_sapiens 0 1352
ENST00000503150 SEPSECS-006 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000514585 SEPSECS-002 nonsense_mediated_decay Homo_sapiens 0 1352

Loading